Hg_chrom1_TN10mRNA_1177
Organism: Heterodera glycines Gene Locus: chr1:13284760-13286302 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 1.146 | 0.896 | 0.729 | 1.232 | 0.451 | 0.838 | 1.232 | 1.33 | 1.285 | 0.694 | 1.657 | 1.369 | 1.49 | 1.365 | 1.157 | 0.693 | 0.64 | 1.083 | 0.518 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.650
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RRKR,RKRAGMAKGASGVIRRPAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.511
|
0.202
|
0.073
|
0.513
|
0.267
|
0.220
|
0.216
|
0.115
|
0.164
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005940
|
1.000
|
1.000
|
Hsc_gene_21270.t1
|
Hsc_gene_21270.t1
|
— | — |
KAI3418358.1 Catalyzes the first step in biosynthesis of glycosaminoglycan [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016702
|
GO:0008150_0.774|GO:0005575_0.758|GO:0110165_0.750|GO:0009987_0.701|GO:0005622_0.691|GO:0005737_0.657|GO:0003674_0.651|GO:0050896_0.618|GO:0051716_0.586|GO:0006950_0.566|GO:0042221_0.562|GO:0005488_0.561|GO:0009628_0.547|GO:0033554_0.536|GO:0070887_0.535|GO:0070482_0.519|GO:0016020_0.516|GO:0001666_0.515|GO:0036293_0.515|GO:0036294_0.515|GO:0071453_0.515|GO:0071456_0.515
|
IPR011051+100-244+|IPR012864+45-265_101-269+|IPR014710+99-249+
|
— |
PF07847+101-269+PCO_ADO
|
— |
PTHR22966+45-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10
|
1.000
|
11-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
31617.100
|
6.601
|
0.500
|
26.056
|
10.563
|
45.070
|
54.930
|
13.732
|
12.324
|
50.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellowgreen
|
772.172
|
790.593
|
736.289
|
623.100
|
623.843
|
647.326
|
1172.344
|
935.173
|
786.327
|
715.259
|
745.717
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.334
|
-0.481
|
-0.131
|
— | — |
0.868
|
0.428
|
0.469
|
— | — | — | — | — |
No JSON data available for plots.