Hg_chrom1_TN10mRNA_1178
Organism: Heterodera glycines Gene Locus: chr1:13286466-13287469 Feature type: polypeptideProtein Sequence
Length: 288
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 0.404 | 0.568 | 0.958 | 0.984 | 0.801 | 2.48 | 0.174 | 1.235 | 0.704 | 1.315 | 2.042 | 1.254 | 2.137 | 1.346 | 0.546 | 0.398 | 0.473 | 0.267 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1124
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.850
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRRK,GIVGEKGPPGQKGKRGERGTRGEKGGSGPKGKE
|
— | — | — | — | — | — |
0.043
|
— | — |
0.054
|
0.073
|
0.005
|
0.173
|
0.382
|
0.134
|
0.332
|
0.003
|
0.440
|
0.279
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005941
|
1.000
|
1.000
|
Hsc_gene_21271.t1
|
Hsc_gene_21271.t1
|
— | — |
KAI3422387.1 hypothetical protein GPALN_012905 [Globodera pallida]
|
RME85049
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008160+140-195_213-270+|IPR050632+27-279+
|
— |
PF01391+140-195_213-270+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR24637+27-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
90-288
|
1.000
|
1-89
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
29883.600
|
10.388
|
18.500
|
24.653
|
6.250
|
35.764
|
64.236
|
15.625
|
9.028
|
55.208
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
62.432
|
66.514
|
57.844
|
22.223
|
23.904
|
30.144
|
88.565
|
26.360
|
205.663
|
0.560
|
88.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.432
|
-1.718
|
-1.270
|
— | — |
1.567
|
— |
1.894
|
6.410
|
— | — |
9.397
|
— |
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