Hg_chrom1_TN10mRNA_1180
Organism: Heterodera glycines Gene Locus: chr1:13289420-13290073 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.017 | 0.455 | 1.293 | 0.312 | 1.282 | 0.893 | 1.875 | 1.111 | 0.76 | 1.326 | 1.103 | 2.083 | 0.721 | 2.168 | 1.339 | 0.615 | 1.231 | 0.0 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1126
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.545
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKGIVIKVVVKHPKK
|
— | — |
52-75
|
0.998
|
— | — |
0.000
|
— | — |
0.064
|
0.957
|
0.010
|
0.251
|
0.044
|
0.015
|
0.045
|
0.019
|
0.013
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005943
|
1.000
|
1.000
|
Hsc_gene_21273.t1
|
Hsc_gene_21273.t1
|
— |
Q29RU1.1 Small ribosomal subunit protein uS12m [Bos taurus]
|
KAI6190176.1 Ribosomal protein S12 [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0015935
|
GO:0005575_0.858|GO:0110165_0.845|GO:0005622_0.792|GO:0043226_0.770|GO:0043229_0.755|GO:0005737_0.702|GO:0016020_0.698|GO:0043227_0.666|GO:0043231_0.666
|
IPR005679+67-160_77-92_92-107_108-127_127-144_144-160+|IPR006032+66-158_69-160+|IPR012340+54-160_59-160+
|
— |
PF00164+66-158+Ribosomal_protein_S12/S23
|
— |
PTHR11652+69-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
6nf8_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
18191.210
|
11.614
|
27.000
|
27.500
|
13.125
|
50.000
|
50.000
|
23.125
|
4.375
|
48.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2404.723
|
922.253
|
1113.989
|
1097.338
|
1405.227
|
1282.845
|
1323.227
|
1747.923
|
2144.508
|
5577.483
|
4106.208
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.114
|
— |
0.325
|
— | — |
0.343
|
-0.260
|
— | — | — | — | — |
No JSON data available for plots.