Hg_chrom1_TN10mRNA_1181
Organism: Heterodera glycines Gene Locus: chr1:13290123-13291414 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.068 | 1.285 | 0.853 | 1.237 | 0.634 | 0.505 | 1.59 | 1.021 | 1.098 | 0.803 | 1.455 | 1.669 | 0.68 | 1.731 | 0.707 | 1.101 | 1.071 | 0.544 | 0.831 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1127
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.412
|
0.249
|
0.035
|
0.543
|
0.057
|
0.241
|
0.168
|
0.077
|
0.159
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005944
|
1.000
|
1.000
|
Hsc_gene_21274.t1
|
Hsc_gene_21274.t1
|
— |
P34274.3 TIP41-like protein [Caenorhabditis elegans]
|
KAH7730292.1 TIP41-like family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043666
|
GO:0005575_0.865|GO:0110165_0.861|GO:0008150_0.813|GO:0005622_0.812|GO:0009987_0.755|GO:0065007_0.695|GO:0050789_0.682|GO:0050896_0.657|GO:0050794_0.655|GO:0051716_0.634|GO:0007154_0.602|GO:0016020_0.602|GO:0023052_0.600|GO:0007165_0.589|GO:0005737_0.578|GO:0043226_0.574|GO:0035556_0.565|GO:0043229_0.554|GO:0043227_0.532|GO:0043231_0.519
|
IPR007303+69-252+|IPR051330+29-278+
|
— |
PF04176+69-252+TIP41-like_family
|
— |
PTHR21021+29-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
32553.020
|
6.947
|
2.500
|
31.449
|
12.721
|
50.177
|
49.823
|
16.961
|
14.488
|
48.410
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
577.265
|
403.026
|
310.736
|
321.759
|
370.014
|
385.423
|
504.310
|
343.828
|
364.653
|
1262.384
|
877.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.606
|
-0.462
|
— |
0.170
|
— |
0.397
|
-0.271
|
0.695
|
— | — | — | — | — |
No JSON data available for plots.