Hg_chrom1_TN10mRNA_1183
Organism: Heterodera glycines Gene Locus: chr1:13296887-13297869 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 0.761 | 0.765 | 1.289 | 0.779 | 0.719 | 0.946 | 2.103 | 1.35 | 0.695 | 1.204 | 2.199 | 1.558 | 1.168 | 2.575 | 0.467 | 0.306 | 0.991 | 0.719 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1129
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKWGFTPFDREVYEKHRKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.385
|
0.327
|
0.056
|
0.602
|
0.207
|
0.080
|
0.091
|
0.005
|
0.110
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005946
|
1.000
|
1.000
|
Hsc_gene_21276.t1
|
Hsc_gene_21276.t1
|
— |
Q09533.1 Large ribosomal subunit protein uL16 [Caenorhabditis elegans]
|
KAI3422382.1 60S ribosomal protein L10 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.818|GO:0110165_0.818|GO:0005622_0.746|GO:0008150_0.662|GO:0043226_0.640|GO:0043229_0.640|GO:0005737_0.638|GO:0003674_0.563|GO:0043228_0.501|GO:0043232_0.501
|
IPR001197+1-172_1-182_1-210+|IPR016180+43-166+|IPR018255+108-129+|IPR036920+1-213_4-173+|IPR047873+12-166+
|
— |
PF00252+12-166+Ribosomal_protein_L16p/L10e
|
G3DSA:3.90.1170.10:FF:000002+1-206+60S_ribosomal_protein_L10
|
PTHR11726+1-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-214
|
9cai_CI
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
24880.180
|
10.956
|
29.500
|
33.645
|
13.551
|
44.860
|
55.140
|
24.766
|
8.879
|
43.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
12620.106
|
3036.789
|
6475.734
|
14630.641
|
15658.560
|
12590.777
|
7913.310
|
4762.191
|
16185.026
|
18673.693
|
17607.122
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
2.131
|
1.284
|
— |
-0.299
|
-0.660
|
-1.510
|
0.876
|
— | — | — | — | — |
No JSON data available for plots.