SCN Proteipedia

Hg_chrom1_TN10mRNA_1184

Organism: Heterodera glycines Gene Locus: chr1:13298368-13304304 Feature type: polypeptide

Protein Sequence

Length: 1,088

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.037	0.834	0.902	0.38	0.873	0.943	0.766	1.057	1.471	1.317	0.933	1.568	1.098	0.672	1.069	1.247	0.814	1.462	0.99	0.433	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1130	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.584

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	KKPTEHSLSSTEFKRYRRN,KRTIGAVRWITKGVKKSRS	—	—	—	—	—	—	0.000	—	—	0.090	0.296	0.013	0.176	0.425	0.598	0.628	0.085	0.423	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005947	1.000	1.000	Hsc_gene_21277.t1	Hsc_gene_21277.t1	—	Q04656.4 Copper-transporting ATPase 1 [Homo sapiens]	KAI3422381.1 Heavy-metal-associated domain [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005507\|GO:0005524\|GO:0006812\|GO:0016020\|GO:0016887\|GO:0019829\|GO:0046872	GO:0008150_0.845\|GO:0005575_0.831\|GO:0110165_0.831\|GO:0016020_0.772\|GO:0071944_0.739\|GO:0005886_0.704\|GO:0003674_0.679\|GO:0009987_0.677\|GO:0005622_0.594\|GO:0006810_0.591\|GO:0051179_0.591\|GO:0051234_0.591\|GO:0043226_0.540\|GO:0043229_0.527\|GO:0005737_0.525	IPR001757+741-920+\|IPR001763+69-124+\|IPR006121+27-93_30-90_30-92_104-170_110-167_110-170+\|IPR006122+28-90+\|IPR008250+360-444+\|IPR017969+33-62+\|IPR018303+580-586+\|IPR023214+545-900+\|IPR023298+287-969+\|IPR023299+585-774_598-662+\|IPR027256+269-951+\|IPR036163+26-98_102-175+\|IPR036412+576-948+\|IPR044492+560-894+	—	PF00122+348-558+E1-E2_ATPase\|PF00403+30-90_110-167+Heavy-metal-associated_domain\|PF00702+574-857+haloacid_dehalogenase-like_hydrolase	G3DSA:2.70.150.10:FF:000002+325-448+Copper-transporting_ATPase_1,_putative\|G3DSA:3.30.70.100:FF:000001+24-97_101-174+ATPase_copper_transporting_beta\|G3DSA:3.40.50.1000:FF:000144+770-815+copper-transporting_ATPase_1_isoform_X2	PTHR43520+20-959+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1020-1088	1.000	1-1019	3j08_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.766	119263.010	9.072	24.500	23.713	8.824	44.669	55.331	13.511	10.202	51.838

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightcyan	2435.533	3498.492	2712.657	2434.577	2837.591	4448.690	4425.338	2295.120	1325.355	1166.767	1234.733

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.597	-0.660	—	0.189	0.664	—	-1.060	1.089	—	—	—	—	—

No JSON data available for plots.

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