SCN Proteipedia

Hg_chrom1_TN10mRNA_1186

Organism: Heterodera glycines Gene Locus: chr1:13307466-13310646 Feature type: polypeptide

Protein Sequence

Length: 752

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.68	1.082	0.943	0.642	1.463	0.887	0.855	0.997	1.566	1.024	1.028	2.034	1.256	0.767	1.303	0.608	0.959	1.128	0.307	0.978	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1132	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KEKKERKR,KRDMENYLRALKRFAK	4-24	0.995	—	—	—	—	0.000	—	—	0.146	0.917	0.003	0.276	0.081	0.041	0.066	0.018	0.042	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005949	1.000	1.000	Hsc_gene_21279.t1	Hsc_gene_21279.t1	—	Q9XV52.1 Elongation factor G, mitochondrial [Caenorhabditis elegans]	KAI3422380.1 elongation factor EF-G [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003746\|GO:0003924\|GO:0005525\|GO:0006414	GO:0005575_0.858\|GO:0110165_0.857\|GO:0005622_0.757\|GO:0005737_0.719\|GO:0016020_0.670\|GO:0043226_0.607\|GO:0043229_0.578\|GO:0008150_0.577\|GO:0043227_0.564\|GO:0043231_0.530	IPR000640+643-730_644-729+\|IPR000795+41-316_41-318_45-58_94-102_114-124_130-141_166-175+\|IPR004161+365-431+\|IPR004540+37-732_39-734+\|IPR005225+42-216+\|IPR005517+520-640_521-641+\|IPR009000+282-435+\|IPR009022+446-520+\|IPR014721+526-731+\|IPR020568+520-640+\|IPR027417+35-330_40-316+\|IPR031157+87-102+\|IPR035647+445-522_646-736+\|IPR041095+445-518+	SM00838+643-730+\|SM00889+521-641+	PF00009+41-316+Elongation_factor_Tu_GTP_binding_domain\|PF00679+644-729+Elongation_factor_G_C-terminus\|PF03144+365-431+Elongation_factor_Tu_domain_2\|PF03764+520-640+Elongation_factor_G,_domain_IV\|PF14492+445-518+Elongation_Factor_G,_domain_III	G3DSA:2.40.30.10:FF:000022+328-448+Elongation_factor_G,_mitochondrial\|G3DSA:3.30.70.240:FF:000001+647-717+Elongation_factor_G\|G3DSA:3.30.70.870:FF:000001+449-525+Elongation_factor_G\|G3DSA:3.40.50.300:FF:000029+34-326+Elongation_factor_G	PTHR43636+25-731+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	746-752	1.000	1-745	7a5k_r1	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.564	85296.970	6.665	1.500	29.122	10.239	47.340	52.660	15.160	13.963	46.277

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	pink	3126.072	1350.687	2336.690	3328.759	4251.709	2934.008	2353.630	1823.133	2952.907	4569.904	3876.906

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.562	1.164	0.619	0.321	-0.520	-0.308	-0.791	0.511	—	—	—	—	—

No JSON data available for plots.

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