Hg_chrom1_TN10mRNA_1187
Organism: Heterodera glycines Gene Locus: chr1:13310891-13314362 Feature type: polypeptideProtein Sequence
Length: 398
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.081 | 1.344 | 0.822 | 0.866 | 0.963 | 1.353 | 0.508 | 1.633 | 1.452 | 1.256 | 0.533 | 1.035 | 1.047 | 1.063 | 1.077 | 1.113 | 1.112 | 0.685 | 1.546 | 0.739 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1133
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.567
|
0.093
|
0.020
|
0.416
|
0.136
|
0.191
|
0.165
|
0.081
|
0.150
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005950
|
1.000
|
1.000
|
Hsc_gene_21280.t1
|
Hsc_gene_21280.t1
|
— |
P61962.1 DDB1- and CUL4-associated factor 7 [Homo sapiens]
|
KAI3422379.1 ddb1 and cul4 associated factor 7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.742|GO:0110165_0.728|GO:0005622_0.669|GO:0008150_0.667|GO:0016020_0.573|GO:0005737_0.530|GO:0043226_0.525|GO:0043229_0.520|GO:0043227_0.512
|
IPR001680+164-207_221-263_226-263_313-353_316-352_320-355+|IPR015943+55-396+|IPR036322+68-396+|IPR045159+50-398+
|
SM00320+164-207_221-263_313-353+
|
PF00400+226-263_316-352+WD_domain,_G-beta_repeat
|
— |
PTHR19919+50-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-398
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
44589.510
|
6.554
|
0.500
|
22.362
|
11.558
|
47.990
|
52.010
|
12.060
|
10.302
|
51.005
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
781.183
|
862.920
|
622.532
|
488.220
|
700.083
|
546.426
|
1641.907
|
508.646
|
556.132
|
986.550
|
802.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.702
|
-0.959
|
-0.241
|
0.488
|
-0.343
|
1.598
|
— |
1.835
|
— | — | — | — | — |
No JSON data available for plots.