Hg_chrom1_TN10mRNA_1188
Organism: Heterodera glycines Gene Locus: chr1:13315295-13316746 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.017 | 0.909 | 0.216 | 0.885 | 2.564 | 0.781 | 1.719 | 0.694 | 0.929 | 0.663 | 1.103 | 0.868 | 1.322 | 1.148 | 1.92 | 0.564 | 1.042 | 0.0 | 0.551 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.465
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RILKRRA,LKRRAARAKLEMEGRIPKQRRKYLHESRHRHAQNRARRAGGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.870
|
0.101
|
0.037
|
0.268
|
0.049
|
0.058
|
0.043
|
0.005
|
0.063
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005951
|
1.000
|
1.000
|
Hsc_gene_21281.t1
|
— | — |
P18576.1 Nuclear transcription factor Y subunit alpha [Rattus norvegicus]
|
KAI3422378.1 DNA-directed RNA polymerase II subunit RPB9 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355
|
GO:0008150_0.940|GO:0065007_0.798|GO:0050789_0.788|GO:0009987_0.786|GO:0005575_0.756|GO:0110165_0.751|GO:0050794_0.725|GO:0005622_0.722|GO:0008152_0.720|GO:0043170_0.720|GO:0009058_0.717|GO:0009059_0.717|GO:0010467_0.717|GO:0044237_0.717|GO:0044249_0.717|GO:0006139_0.698|GO:0044238_0.698|GO:0016070_0.690|GO:0034654_0.690|GO:0090304_0.690|GO:0141187_0.686|GO:0032774_0.683|GO:0043226_0.653|GO:0006351_0.651|GO:0019222_0.647|GO:0016020_0.646|GO:0031323_0.644|GO:0060255_0.634|GO:0080090_0.634|GO:0043229_0.633|GO:0009889_0.623|GO:0031326_0.623|GO:0010468_0.613|GO:0010556_0.613|GO:0003674_0.608|GO:0005488_0.608|GO:0019219_0.596|GO:0051252_0.596|GO:0043227_0.581|GO:0043231_0.581|GO:0006355_0.578|GO:2001141_0.578|GO:0005634_0.572|GO:0032502_0.513|GO:0048856_0.513
|
IPR001289+18-304_219-280_220-280_222-277_223-245_254-277+
|
SM00521+219-280+
|
PF02045+222-277+CCAAT-binding_transcription_factor_(CBF-B/NF-YA)_subunit_B
|
— |
PTHR12632+18-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66;174-320
|
1.000
|
67-173
|
4awl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
34938.660
|
7.301
|
4.500
|
23.750
|
8.438
|
55.000
|
45.000
|
13.438
|
10.312
|
54.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellowgreen
|
538.422
|
629.447
|
305.953
|
339.303
|
302.210
|
430.047
|
792.678
|
708.009
|
733.056
|
490.438
|
594.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.272
|
-1.028
|
0.259
|
-0.199
|
0.524
|
0.893
|
0.618
|
0.305
|
— | — | — | — | — |
No JSON data available for plots.