Hg_chrom1_TN10mRNA_1192
Organism: Heterodera glycines Gene Locus: chr1:13325988-13327638 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 0.944 | 1.127 | 0.147 | 1.781 | 0.986 | 0.483 | 0.427 | 0.617 | 1.097 | 0.939 | 1.634 | 1.306 | 0.986 | 1.57 | 1.435 | 0.806 | 0.809 | 0.493 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1138
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRPTVWKLPAPFSRLRKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.228
|
0.153
|
0.053
|
0.698
|
0.081
|
0.124
|
0.195
|
0.060
|
0.446
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005954
|
1.000
|
1.000
|
Hsc_gene_21285.t1
|
Hsc_gene_21285.t1
|
— | — |
KAI3422376.1 Sodium hydrogen exchanger [Globodera pallida]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
328-468
|
1.000
|
1-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
52631.810
|
4.871
|
-12.000
|
31.624
|
8.120
|
54.487
|
45.513
|
14.744
|
16.880
|
49.786
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
1324.662
|
1235.041
|
1254.668
|
1285.658
|
1148.277
|
1055.222
|
1367.312
|
998.399
|
1285.278
|
1702.221
|
1523.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.207
|
— |
0.144
|
-0.195
|
— |
0.385
|
— |
0.597
|
— | — | — | — | — |
No JSON data available for plots.