Hg_chrom1_TN10mRNA_1194
Organism: Heterodera glycines Gene Locus: chr1:13329803-13332310 Feature type: polypeptideProtein Sequence
Length: 548
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 0.891 | 0.829 | 0.503 | 0.973 | 0.889 | 0.826 | 1.734 | 1.135 | 1.332 | 0.829 | 1.395 | 1.571 | 0.737 | 1.452 | 0.912 | 0.927 | 1.023 | 1.404 | 1.02 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1140
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.760
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KRRS,PKGKRFR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.188
|
0.293
|
0.053
|
0.403
|
0.234
|
0.710
|
0.513
|
0.045
|
0.273
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005956
|
1.000
|
1.000
|
Hsc_gene_21287.t1
|
— | — |
Q91WF7.1 Polyphosphoinositide phosphatase [Mus musculus]
|
KAI1702718.1 sacI homology domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791|GO:0043813|GO:0046856
|
GO:0008150_0.846|GO:0005575_0.810|GO:0110165_0.807|GO:0009987_0.740|GO:0016020_0.658|GO:0005622_0.657|GO:0005737_0.612|GO:0008152_0.602|GO:0003674_0.584|GO:0044238_0.581|GO:0043226_0.569|GO:0043229_0.564|GO:0044237_0.564|GO:0071944_0.520|GO:0043227_0.515|GO:0043231_0.509
|
IPR002013+95-279_155-496_290-355+|IPR043573+290-357+
|
— |
PF02383+95-279_290-355+SacI_homology_domain
|
— |
PTHR45738+290-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-548
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
62492.760
|
9.361
|
21.500
|
26.460
|
14.416
|
45.803
|
54.197
|
16.058
|
10.401
|
46.350
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
639.836
|
968.379
|
1027.870
|
892.155
|
770.544
|
748.064
|
953.029
|
612.788
|
702.916
|
32.283
|
319.697
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.144
|
-0.255
|
— |
-0.243
|
— |
0.359
|
-0.394
|
0.779
|
4.493
|
— |
5.287
|
— | — |
No JSON data available for plots.