Hg_chrom1_TN10mRNA_1195
Organism: Heterodera glycines Gene Locus: chr1:13332485-13334104 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.926 | 1.342 | 0.949 | 0.568 | 1.145 | 0.704 | 0.392 | 1.236 | 1.16 | 1.448 | 0.999 | 1.131 | 2.366 | 0.74 | 0.953 | 1.217 | 0.766 | 0.874 | 0.845 | 0.727 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1141
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RSRKRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.197
|
0.025
|
0.599
|
0.188
|
0.152
|
0.291
|
0.032
|
0.074
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005957
|
1.000
|
1.000
|
Hsc_gene_21288.t1
|
Hsc_gene_21288.t1
|
— |
Q5ZR76.1 GDP-D-glucose phosphorylase 1 [Caenorhabditis elegans]
|
KAI1727110.1 GDP-D-glucose phosphorylase 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0080048
|
GO:0008150_0.943|GO:0003674_0.839|GO:0008152_0.780|GO:0044238_0.769|GO:0003824_0.705|GO:0044281_0.695|GO:0005975_0.676|GO:0016740_0.676|GO:0005996_0.670|GO:0016772_0.657|GO:0016779_0.655|GO:0070568_0.650|GO:0080048_0.650|GO:0005575_0.581|GO:0110165_0.575|GO:0005622_0.515
|
IPR026506+27-360+|IPR036265+128-200+
|
— | — | — |
PTHR20884+27-360+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
41557.580
|
6.761
|
1.500
|
25.824
|
14.560
|
47.527
|
52.473
|
13.736
|
12.088
|
46.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
654.269
|
236.895
|
378.401
|
374.246
|
508.466
|
553.309
|
492.944
|
500.238
|
1070.011
|
918.231
|
983.280
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.446
|
0.523
|
— |
0.410
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.