SCN Proteipedia

Hg_chrom1_TN10mRNA_1196

Organism: Heterodera glycines Gene Locus: chr1:13334126-13338071 Feature type: polypeptide

Protein Sequence

Length: 682

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.989	0.852	1.066	0.455	1.026	0.978	1.082	1.393	1.206	1.229	0.644	1.984	1.344	0.79	1.197	0.922	0.697	1.022	1.353	0.776	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1142	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.980

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.465	0.254	0.064	0.655	0.181	0.190	0.187	0.184	0.250	0.084

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005958	1.000	1.000	Hsc_gene_21289.t1	Hsc_gene_21289.t1	—	Q9NAE2.2 Probable urocanate hydratase [Caenorhabditis elegans]	KAI6212168.1 Imidazolonepropionate hydrolase [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016153	GO:0008150_0.944\|GO:0003674_0.893\|GO:0009987_0.878\|GO:0008152_0.809\|GO:0003824_0.797\|GO:0044237_0.775\|GO:0044238_0.772\|GO:0044281_0.733\|GO:0005575_0.719\|GO:0110165_0.710\|GO:0009056_0.702\|GO:0006082_0.698\|GO:0019752_0.698\|GO:0043436_0.698\|GO:0044248_0.687\|GO:0006520_0.685\|GO:0044282_0.684\|GO:0016054_0.681\|GO:0046395_0.681\|GO:1901605_0.681\|GO:0170039_0.680\|GO:0170033_0.679\|GO:0009063_0.674\|GO:0170040_0.674\|GO:1901606_0.674\|GO:0006547_0.670\|GO:0006548_0.670\|GO:0009072_0.670\|GO:0009074_0.670\|GO:0052803_0.670\|GO:0052805_0.670\|GO:0170035_0.670\|GO:0016829_0.661\|GO:0016835_0.657\|GO:0016836_0.656\|GO:0016153_0.650\|GO:0005622_0.633\|GO:0005737_0.590	IPR023636+549-564+\|IPR023637+17-674_63-668_82-672+\|IPR035085+221-442+\|IPR035400+93-218+\|IPR035401+445-653+\|IPR036190+93-661+\|IPR038364+222-442+	—	PF01175+221-442+Urocanase_Rossmann-like_domain\|PF17391+93-218+Urocanase_N-terminal_domain\|PF17392+445-653+Urocanase_C-terminal_domain	G3DSA:3.40.1770.10:FF:000002+88-225+Urocanate_hydratase_1	PTHR12216+17-674+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-682	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.607	75678.290	6.208	-3.500	24.927	12.023	43.109	56.891	12.903	12.023	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	1195.401	2695.242	1807.540	1069.544	1616.143	2129.631	1247.750	2829.231	105.626	127.504	118.128

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.806	-1.471	-0.648	0.564	0.412	-0.761	0.306	-1.038	—	—	4.132	—	—

No JSON data available for plots.

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