Hg_chrom1_TN10mRNA_1197
Organism: Heterodera glycines Gene Locus: chr1:13338472-13341050 Feature type: polypeptideProtein Sequence
Length: 438
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.035 | 0.743 | 0.747 | 0.945 | 0.913 | 1.756 | 0.598 | 2.854 | 0.863 | 1.481 | 0.761 | 1.209 | 1.712 | 1.054 | 1.305 | 0.848 | 0.561 | 0.83 | 1.054 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1143
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
2-27
|
0.914
|
— | — | — | — |
0.000
|
— | — |
0.647
|
0.244
|
0.010
|
0.443
|
0.090
|
0.107
|
0.124
|
0.021
|
0.106
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005959
|
1.000
|
1.000
|
Hsc_gene_21290.t1
|
Hsc_gene_21290.t1;Hsc_gene_21290.t2
|
— |
Q8BGA7.1 Integrator complex subunit 15 [Mus musculus]
|
KAH7697722.1 Protein Y56A3A.31 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.907|GO:0005622_0.842|GO:0016020_0.833|GO:0043226_0.782|GO:0043229_0.770|GO:0043227_0.740|GO:0043231_0.726|GO:0005634_0.630|GO:0032991_0.625|GO:0140513_0.556|GO:0032039_0.540
|
IPR027844+65-303_80-270+
|
— |
PF14964+80-270+Integrator_complex_subunit_15
|
— |
PTHR14540+65-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-80
|
1.000
|
81-438
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
49939.390
|
8.624
|
20.500
|
26.712
|
15.068
|
46.119
|
53.881
|
17.123
|
9.589
|
44.292
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
1158.524
|
951.656
|
921.338
|
1034.293
|
1218.339
|
1012.490
|
1316.742
|
852.405
|
839.402
|
1698.768
|
1330.468
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.277
|
— |
0.276
|
0.204
|
-0.252
|
0.390
|
-0.353
|
0.771
|
— | — | — | — | — |
No JSON data available for plots.