Hg_chrom1_TN10mRNA_1198
Organism: Heterodera glycines Gene Locus: chr1:13349031-13353133 Feature type: polypeptideProtein Sequence
Length: 981
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.735 | 1.517 | 0.76 | 0.387 | 1.495 | 3.215 | 0.388 | 1.223 | 0.929 | 0.854 | 1.05 | 2.039 | 0.991 | 1.255 | 1.144 | 1.092 | 0.819 | 0.571 | 0.235 | 0.39 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1144
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL,RKMANLLGQEKKKEE,KKNKEKDETIAKLKKKMD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.814
|
0.066
|
0.007
|
0.586
|
0.081
|
0.026
|
0.037
|
0.012
|
0.099
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001711
|
1.000
|
3.000
|
Hsc_gene_21291.t1;Hsc_gene_21291.t2;Hsc_gene_21291.t3
|
— | — | — |
KAI3422370.1 hypothetical protein GPALN_012889 [Globodera pallida]
|
DAR54746
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
41-402;450-922
|
3.000
|
1-40;403-449;923-981
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
112441.610
|
6.942
|
6.000
|
28.135
|
7.645
|
59.837
|
40.163
|
14.985
|
13.150
|
44.343
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
1513.142
|
1641.091
|
1597.228
|
2724.503
|
2556.591
|
2083.742
|
2903.164
|
1336.299
|
157.665
|
935.768
|
602.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.269
|
0.594
|
0.880
|
-0.123
|
-0.280
|
0.489
|
-0.751
|
1.264
|
— |
4.301
|
— | — | — |
No JSON data available for plots.