Hg_chrom1_TN10mRNA_1199
Organism: Heterodera glycines Gene Locus: chr1:13355550-13357680 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.217 | 1.136 | 0.719 | 0.321 | 2.016 | 1.252 | 0.969 | 0.698 | 0.568 | 1.006 | 0.564 | 2.052 | 0.711 | 0.76 | 1.661 | 1.395 | 0.953 | 0.564 | 0.537 | 0.41 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1145
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRRQPFDEEEEARRKAE,RRKAEAAHSEESVPKRKDS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.782
|
0.129
|
0.025
|
0.368
|
0.026
|
0.038
|
0.085
|
0.046
|
0.082
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005960
|
1.000
|
1.000
|
Hsc_gene_21293.t1
|
Hsc_gene_21293.t1
|
— | — |
KAF7635341.1 Myb_DNA-bind_5 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR028002+7-76+
|
— |
PF13873+7-76+Myb/SANT-like_DNA-binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
91-389
|
2.000
|
1-90;390-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
47135.960
|
4.731
|
-15.000
|
29.302
|
6.047
|
54.651
|
45.349
|
13.256
|
16.047
|
51.628
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
346.370
|
403.416
|
190.822
|
147.067
|
449.755
|
1071.268
|
627.452
|
389.876
|
107.416
|
204.936
|
163.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.308
|
-1.593
|
-0.268
|
1.580
|
1.268
|
-0.762
|
-1.565
|
0.829
|
— | — | — | — | — |
No JSON data available for plots.