Hg_chrom1_TN10mRNA_12
Organism: Heterodera glycines Gene Locus: chr1:156496-161739 Feature type: polypeptideProtein Sequence
Length: 723
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.029 | 0.604 | 0.286 | 0.599 | 3.653 | 0.527 | 1.66 | 0.676 | 0.785 | 0.964 | 0.976 | 0.538 | 1.49 | 1.355 | 1.146 | 1.565 | 0.733 | 0.638 | 0.529 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_12
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.469
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRTTPSLLAAVKARRE,RRPTTFSLPRIFTQKKKDV,KRRPDGTRYVTRRPARKRT,RRPDGTRYVTRRPARKRTT,RKPPPIPSAFSPSSLARKK
|
— | — |
66-89
|
0.995
|
— | — |
0.000
|
— | — |
0.292
|
0.158
|
0.029
|
0.716
|
0.103
|
0.123
|
0.120
|
0.083
|
0.504
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000709
|
1.000
|
5.000
|
Hsc_gene_14954.t1;Hsc_gene_14954.t2;Hsc_gene_14954.t3;Hsc_gene_14954.t4;Hsc_gene_14954.t5
|
— | — | — |
KAI3411136.1 hypothetical protein GPALN_003219 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-723
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
81074.670
|
10.869
|
56.000
|
23.237
|
7.884
|
59.474
|
40.526
|
16.321
|
6.916
|
50.761
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
499.567
|
745.963
|
279.741
|
31.913
|
39.998
|
120.332
|
87.774
|
192.864
|
194.792
|
1477.542
|
927.792
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.647
|
-4.684
|
-3.021
|
— |
1.603
|
-0.446
|
0.577
|
-0.994
|
— | — |
-4.780
|
— | — |
No JSON data available for plots.