Hg_chrom1_TN10mRNA_120
Organism: Heterodera glycines Gene Locus: chr1:822681-824694 Feature type: polypeptideProtein Sequence
Length: 403
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.548 | 1.212 | 0.947 | 0.342 | 0.372 | 0.764 | 0.709 | 2.109 | 0.772 | 1.174 | 0.639 | 0.584 | 0.896 | 2.625 | 1.671 | 1.843 | 0.61 | 0.902 | 1.336 | 0.511 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_116
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRSPSPRRPGRRPHSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.643
|
0.103
|
0.057
|
0.385
|
0.255
|
0.150
|
0.064
|
0.067
|
0.071
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002876
|
2.000
|
1.000
|
Hsc_gene_20312.t1
|
— | — |
P90994.1 Glutathione-independent glyoxalase DJR-1.1 [Caenorhabditis elegans]
|
KAF7632800.1 DJ-1_PfpI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.950|GO:0009987_0.901|GO:0005575_0.883|GO:0110165_0.879|GO:0005622_0.817|GO:0065007_0.777|GO:0050789_0.763|GO:0050794_0.762|GO:0050896_0.758|GO:0016020_0.752|GO:0043226_0.717|GO:0043229_0.711|GO:0005737_0.692|GO:0043227_0.680|GO:0043231_0.673|GO:0051716_0.667|GO:0008152_0.646|GO:0009058_0.645|GO:0044237_0.634|GO:0007154_0.565|GO:0023052_0.562|GO:0048519_0.553|GO:0007165_0.548|GO:0048523_0.548|GO:0044281_0.533|GO:0010646_0.520|GO:0048583_0.520|GO:0023051_0.517|GO:0009966_0.508|GO:0042221_0.506
|
IPR002818+346-385+|IPR029062+327-403_352-402+
|
— |
PF01965+346-385+DJ-1/PfpI_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-163
|
1.000
|
164-403
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
44521.350
|
10.803
|
28.500
|
24.069
|
10.918
|
48.883
|
51.117
|
16.625
|
7.444
|
58.313
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
68.125
|
41.999
|
169.526
|
92.213
|
36.891
|
15.834
|
40.666
|
77.360
|
47.052
|
84.825
|
68.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.786
|
0.998
|
-0.771
|
-1.357
|
-1.203
|
1.372
|
2.185
|
-0.784
|
— | — | — | — | — |
No JSON data available for plots.