Hg_chrom1_TN10mRNA_1200
Organism: Heterodera glycines Gene Locus: chr1:13357893-13361440 Feature type: polypeptideProtein Sequence
Length: 718
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.458 | 0.875 | 0.785 | 0.144 | 2.298 | 1.25 | 0.647 | 0.487 | 0.712 | 1.242 | 1.076 | 1.147 | 1.045 | 1.42 | 0.824 | 0.875 | 0.616 | 0.654 | 0.75 | 0.614 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1146
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.976
|
1.000
|
0.000
|
0.000
|
0.351
|
0.169
|
0.148
|
0.665
|
0.115
|
0.102
|
0.097
|
0.091
|
0.201
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005961
|
1.000
|
1.000
|
Hsc_gene_21294.t1
|
Hsc_gene_21294.t1
|
— |
O17730.1 Putative thiosulfate sulfurtransferase mpst-1 [Caenorhabditis elegans]
|
KAI1702640.1 rhodanese-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004792|GO:0016783
|
GO:0005575_0.933|GO:0110165_0.927|GO:0005622_0.877|GO:0005737_0.802|GO:0016020_0.734|GO:0008150_0.687|GO:0003674_0.668|GO:0043226_0.666|GO:0043229_0.628|GO:0043227_0.574|GO:0009987_0.523|GO:0043231_0.516
|
IPR001307+468-479+|IPR001763+414-561_461-564_465-557_591-712_606-715+|IPR036873+407-578_407-581_598-712_602-707+|IPR045078+406-711+
|
SM00450+414-561_591-712+
|
PF00581+465-557+Rhodanese-like_domain
|
— |
PTHR11364+406-711+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-302
|
1.000
|
303-718
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
79305.770
|
4.363
|
-46.500
|
30.223
|
7.799
|
48.747
|
51.253
|
12.117
|
18.106
|
48.050
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkorange
|
215.761
|
105.544
|
344.227
|
340.049
|
227.465
|
193.394
|
78.860
|
207.704
|
61.579
|
336.305
|
218.565
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.477
|
1.550
|
— |
-0.612
|
— |
-1.284
|
— |
-1.252
|
— | — | — | — | — |