SCN Proteipedia

Hg_chrom1_TN10mRNA_1202

Organism: Heterodera glycines Gene Locus: chr1:13362911-13372986 Feature type: polypeptide

Protein Sequence

Length: 1,003

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.626	0.719	0.87	0.928	1.196	1.432	0.712	1.944	1.108	1.172	0.906	1.349	0.969	1.131	1.363	1.353	0.834	0.891	0.92	0.528	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1148	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRCASKIPNNCSGSRQRRP	26-48	0.981	—	—	—	—	0.000	—	—	0.382	0.170	0.012	0.688	0.195	0.500	0.325	0.020	0.432	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_21296.t1;Hsc_gene_21296.t2;Hsc_gene_21296.t3;Hsc_gene_21297.t1;Hsc_gene_21297.t2	—	O45818.4 Serine/threonine-protein kinase dkf-2 [Caenorhabditis elegans]	KAI3422366.1 Serine/threonine-protein kinase dkf-2, variant 2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.934\|GO:0009987_0.897\|GO:0005575_0.877\|GO:0110165_0.869\|GO:0065007_0.854\|GO:0050789_0.850\|GO:0050794_0.841\|GO:0005622_0.827\|GO:0003674_0.815\|GO:0003824_0.815\|GO:0140096_0.815\|GO:0016740_0.775\|GO:0004672_0.773\|GO:0016301_0.773\|GO:0016772_0.773\|GO:0016773_0.773\|GO:0050896_0.766\|GO:0023052_0.725\|GO:0007154_0.722\|GO:0051716_0.722\|GO:0004674_0.692\|GO:0032501_0.692\|GO:0007165_0.680\|GO:0016020_0.676\|GO:0048518_0.648\|GO:0008152_0.642\|GO:0043170_0.642\|GO:0048522_0.631\|GO:0005737_0.614\|GO:0044237_0.602\|GO:0044238_0.574\|GO:0035556_0.560\|GO:0019222_0.552\|GO:0031323_0.542\|GO:0043226_0.539\|GO:0009058_0.536\|GO:0060255_0.534\|GO:0044249_0.532\|GO:0019538_0.521\|GO:0043229_0.519\|GO:0043412_0.509\|GO:0005488_0.504\|GO:0032502_0.504\|GO:0036211_0.503\|GO:0009893_0.502	IPR000719+702-958_706-958+\|IPR001849+520-643_521-645+\|IPR002219+99-150_100-150_101-150_104-151_301-352_302-350_302-352+\|IPR008271+821-833+\|IPR011009+705-981+\|IPR011993+521-648+\|IPR017441+708-731+\|IPR020454+98-112_114-123_127-138_139-151+\|IPR046349+81-153_287-352+	SM00109+99-150_302-352+\|SM00220+702-958+\|SM00233+521-645+	PF00069+706-958+Protein_kinase_domain\|PF00130+104-151_302-350+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)	G3DSA:1.10.510.10:FF:001159+695-975+Protein_kinase_D4\|G3DSA:3.30.60.20:FF:000019+93-167+Serine/threonine-protein_kinase\|G3DSA:3.30.60.20:FF:000022+300-356+SH3_and_cysteine-rich_domain-containing_protein_3_isoform_2	PTHR22968+2-997+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	158-205;355-528;638-684	4.000	1-157;206-354;529-637;685-1003	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.799	112951.420	8.047	26.500	28.514	10.369	51.745	48.255	16.550	11.964	48.255

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	2337.450	4805.353	2680.296	1201.414	1035.390	1364.910	1177.709	2368.357	558.982	4319.571	2707.890

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.073	-2.137	-1.048	-0.246	0.412	-0.202	0.690	-0.865	-3.060	—	—	—	—

No JSON data available for plots.

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