SCN Proteipedia

Hg_chrom1_TN10mRNA_1203

Organism: Heterodera glycines Gene Locus: chr1:13363440-13365788 Feature type: polypeptide

Protein Sequence

Length: 534

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.653	0.74	0.749	0.517	1.28	1.489	0.713	1.217	1.29	1.316	0.709	1.542	1.04	1.26	1.299	1.338	0.829	1.05	1.008	0.441	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1148	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRKGKR	—	—	28-88	0.999	—	—	0.000	—	—	0.374	0.249	0.147	0.578	0.198	0.120	0.159	0.026	0.234	0.142

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005963	1.000	1.000	Hsc_gene_21296.t2	Hsc_gene_21296.t1;Hsc_gene_21296.t2	—	A8XQD5.2 Serine/threonine-protein kinase dkf-2 [Caenorhabditis briggsae]	KAI3422365.1 Serine/threonine-protein kinase dkf-2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.911\|GO:0009987_0.861\|GO:0005575_0.843\|GO:0110165_0.836\|GO:0065007_0.818\|GO:0050789_0.813\|GO:0005622_0.799\|GO:0050794_0.792\|GO:0003674_0.784\|GO:0003824_0.784\|GO:0140096_0.784\|GO:0016740_0.771\|GO:0016772_0.753\|GO:0004672_0.749\|GO:0016301_0.749\|GO:0016773_0.749\|GO:0050896_0.725\|GO:0051716_0.672\|GO:0023052_0.655\|GO:0007154_0.653\|GO:0004674_0.648\|GO:0005737_0.633\|GO:0016020_0.628\|GO:0007165_0.613\|GO:0032501_0.589\|GO:0048518_0.585\|GO:0008152_0.571\|GO:0043170_0.571\|GO:0048522_0.569\|GO:0044237_0.561\|GO:0044238_0.517\|GO:0043226_0.501	IPR000719+233-489_237-489+\|IPR008271+352-364+\|IPR011009+236-512+\|IPR017441+239-262+	SM00220+233-489+	PF00069+237-489+Protein_kinase_domain	G3DSA:1.10.510.10:FF:001159+226-504+Protein_kinase_D4	PTHR22968+155-528+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-4;80-215	2.000	5-79;216-534	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.741	59768.310	6.816	2.500	25.281	8.989	48.689	51.311	13.483	11.798	48.315

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	2337.450	4805.353	2680.296	1201.414	1035.390	1364.910	1177.709	2368.357	558.982	4319.571	2707.890

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.073	-2.137	-1.048	-0.246	0.412	-0.202	0.690	-0.865	-3.060	—	—	—	—

No JSON data available for plots.

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