Hg_chrom1_TN10mRNA_1206
Organism: Heterodera glycines Gene Locus: chr1:13378712-13383820 Feature type: polypeptideProtein Sequence
Length: 1,191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.113 | 0.748 | 0.608 | 1.147 | 1.701 | 0.66 | 0.924 | 1.549 | 1.623 | 0.496 | 1.185 | 1.609 | 0.823 | 1.199 | 0.9 | 0.716 | 1.018 | 1.421 | 0.716 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1151
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.783
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRNGGQQHREQQRQRARER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.299
|
0.302
|
0.011
|
0.146
|
0.855
|
0.379
|
0.535
|
0.003
|
0.258
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005965
|
1.000
|
1.000
|
Hsc_gene_21300.t1
|
Hsc_gene_21300.t1
|
— |
Q6ZQ89.2 E3 ubiquitin-protein ligase MARCHF6 [Mus musculus]
|
KAI3422360.1 RINGv [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.923|GO:0005575_0.821|GO:0110165_0.821|GO:0005886_0.816|GO:0016020_0.816|GO:0071944_0.816|GO:0003674_0.724|GO:0005622_0.699|GO:0043226_0.679|GO:0043229_0.646|GO:0043227_0.631|GO:0008152_0.620|GO:0043170_0.620|GO:0044238_0.619|GO:0043231_0.596|GO:0005737_0.594|GO:0005773_0.594|GO:0012505_0.565|GO:0009987_0.564|GO:0019538_0.524
|
IPR011016+63-122_70-116_71-115+|IPR013083+56-126+
|
SM00744+70-116+
|
PF12906+71-115+RING-variant_domain
|
G3DSA:3.30.40.10:FF:000287+58-129+RING_finger_membrane_protein
|
PTHR13145+51-1147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
240-363;675-849;1168-1191
|
3.000
|
1-239;364-674;850-1167
|
2d8s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
135674.090
|
5.678
|
-11.000
|
21.998
|
11.923
|
44.081
|
55.919
|
10.999
|
10.999
|
44.416
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
3219.821
|
6263.301
|
3532.557
|
2927.623
|
3055.550
|
3369.329
|
4445.195
|
3386.916
|
3882.712
|
1057.006
|
2268.023
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.056
|
-1.234
|
-0.162
|
— |
0.156
|
0.409
|
— |
0.534
|
— | — | — | — | — |
No JSON data available for plots.