Hg_chrom1_TN10mRNA_121
Organism: Heterodera glycines Gene Locus: chr1:825268-832807 Feature type: polypeptideProtein Sequence
Length: 1,072
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 1.302 | 0.814 | 0.708 | 0.793 | 1.818 | 0.655 | 1.399 | 1.14 | 1.223 | 0.707 | 1.866 | 0.881 | 0.825 | 1.599 | 1.253 | 1.025 | 0.933 | 1.22 | 0.466 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_117
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RSRKRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.475
|
0.124
|
0.017
|
0.331
|
0.110
|
0.066
|
0.116
|
0.157
|
0.127
|
0.161
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_20305.t1;Hsc_gene_20306.t1
|
— |
Q9NU22.2 Midasin [Homo sapiens]
|
KAH7723681.1 midasin [Aphelenchus avenae]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0008150_0.968|GO:0009987_0.923|GO:0005575_0.921|GO:0110165_0.784|GO:0071840_0.765|GO:0016020_0.705|GO:0005622_0.702|GO:0044085_0.693|GO:0022613_0.670|GO:0042254_0.670|GO:0043226_0.658|GO:0043229_0.638|GO:0043227_0.605|GO:0043231_0.582|GO:0065007_0.564|GO:0005737_0.553|GO:0003674_0.550|GO:0050789_0.547|GO:0005634_0.517
|
IPR011704+289-425+|IPR027417+7-109_74-210_82-140_259-458_273-442+
|
— |
PF07728+289-425+AAA_domain_(dynein-related_subfamily)
|
G3DSA:3.40.50.300:FF:000142+272-442+Midasin
|
PTHR48103+196-482+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
575-721;877-991
|
3.000
|
1-574;722-876;992-1072
|
6orb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.881
|
121183.160
|
9.921
|
50.000
|
24.534
|
9.142
|
52.239
|
47.761
|
15.299
|
9.235
|
49.160
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
1062.095
|
1807.014
|
2154.937
|
1651.666
|
1257.842
|
1158.263
|
711.090
|
1356.629
|
676.032
|
353.104
|
491.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.267
|
-0.276
|
-0.425
|
— |
-0.694
|
— |
-0.788
|
— | — | — | — | — |
No JSON data available for plots.