Hg_chrom1_TN10mRNA_1211
Organism: Heterodera glycines Gene Locus: chr1:13397096-13402114 Feature type: polypeptideProtein Sequence
Length: 967
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.541 | 1.395 | 0.978 | 0.749 | 1.568 | 1.087 | 0.566 | 0.827 | 0.942 | 0.894 | 1.347 | 1.338 | 0.948 | 1.332 | 1.224 | 1.403 | 0.882 | 0.83 | 0.557 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1154
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,RHRR,RPRR,GRKKRMSRGGAEKK,RKKRMSRGGAEKKVKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.939
|
0.043
|
0.019
|
0.213
|
0.040
|
0.015
|
0.017
|
0.005
|
0.070
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005967
|
1.000
|
1.000
|
Hsc_gene_21304.t1
|
Hsc_gene_21304.t1
|
— | — |
KAI3422355.1 hypothetical protein GPALN_012878 [Globodera pallida]
|
MDG2001101
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
143-809;960-967
|
2.000
|
1-142;810-959
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
109207.840
|
7.500
|
9.000
|
31.334
|
7.756
|
56.774
|
43.226
|
16.546
|
14.788
|
50.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
2296.182
|
1785.488
|
1779.715
|
1777.889
|
2085.126
|
1698.861
|
2570.367
|
1156.766
|
1687.828
|
3959.596
|
2985.981
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.235
|
-0.143
|
0.108
|
0.198
|
-0.281
|
0.608
|
-0.659
|
1.294
|
— | — | — | — | — |
No JSON data available for plots.