Hg_chrom1_TN10mRNA_1212
Organism: Heterodera glycines Gene Locus: chr1:13402173-13404983 Feature type: polypeptideProtein Sequence
Length: 635
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.099 | 0.659 | 0.706 | 0.892 | 1.05 | 0.806 | 0.551 | 1.575 | 1.383 | 0.74 | 2.131 | 1.837 | 0.818 | 1.093 | 1.327 | 1.033 | 0.74 | 1.211 | 0.509 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1155
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KPTRKKRM,RKKRMVTPTAEKEEREKRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.075
|
0.092
|
0.021
|
0.137
|
0.371
|
0.310
|
0.356
|
0.115
|
0.770
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005968
|
1.000
|
1.000
|
Hsc_gene_21305.t1
|
Hsc_gene_21305.t1
|
— |
Q652N5.1 Probable anion transporter 4, chloroplastic [Oryza sativa Japonica Group]
|
KAI1722102.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.957|GO:0009987_0.888|GO:0005575_0.870|GO:0110165_0.870|GO:0051179_0.800|GO:0016020_0.795|GO:0051234_0.787|GO:0006810_0.785|GO:0003674_0.780|GO:0055085_0.710|GO:0071944_0.688|GO:0005886_0.678|GO:0005215_0.652|GO:0022857_0.652|GO:0005622_0.608|GO:0043226_0.594|GO:0043229_0.582|GO:0043227_0.541|GO:0043231_0.519|GO:0015711_0.510|GO:0005737_0.509
|
IPR011701+203-533+|IPR020846+149-592+|IPR036259+115-589_138-364_396-592+
|
— |
PF07690+203-533+Major_Facilitator_Superfamily
|
— |
PTHR45757+109-619+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-129;603-635
|
1.000
|
130-602
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
70942.050
|
8.527
|
11.500
|
20.315
|
11.024
|
44.724
|
55.276
|
11.339
|
8.976
|
48.346
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
304.169
|
466.988
|
756.032
|
556.856
|
283.151
|
92.262
|
57.911
|
640.212
|
234.647
|
84.725
|
148.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.467
|
— |
-0.333
|
-1.006
|
-1.604
|
-0.660
|
2.690
|
-3.323
|
— | — | — | — | — |
No JSON data available for plots.