SCN Proteipedia

Hg_chrom1_TN10mRNA_1213

Organism: Heterodera glycines Gene Locus: chr1:13406430-13409470 Feature type: polypeptide

Protein Sequence

Length: 619

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.714	0.977	0.676	0.668	0.565	0.704	0.846	0.969	1.544	1.899	0.245	1.616	2.827	1.181	1.055	1.2	0.556	0.955	0.994	0.76	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1156	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.063	0.114	0.017	0.139	0.351	0.494	0.357	0.022	0.504	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000759	1.000	5.000	Hsc_gene_21306.t1;Hsc_gene_23051.t1;Hsc_gene_23051.t2;Hsc_gene_23051.t3;Hsc_gene_23052.t1	Hsc_gene_21306.t1	—	Q19425.2 Sodium-coupled neutral amino acid transporter 9 homolog [Caenorhabditis elegans]	KAH7726502.1 Protein F13H10.3 a [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.937\|GO:0110165_0.933\|GO:0008150_0.922\|GO:0016020_0.914\|GO:0009987_0.890\|GO:0006810_0.859\|GO:0051179_0.859\|GO:0051234_0.859\|GO:0055085_0.827\|GO:0003674_0.820\|GO:0065007_0.809\|GO:0005215_0.791\|GO:0022857_0.791\|GO:0050896_0.784\|GO:0050789_0.780\|GO:0051716_0.765\|GO:0050794_0.751\|GO:0071705_0.709\|GO:0042221_0.695\|GO:0071944_0.684\|GO:0015711_0.683\|GO:0005488_0.678\|GO:0005886_0.678\|GO:0048583_0.673\|GO:0005515_0.672\|GO:0015849_0.666\|GO:0046942_0.664\|GO:1903825_0.664\|GO:1905039_0.663\|GO:0006865_0.658\|GO:0070887_0.657\|GO:0003333_0.654\|GO:0008514_0.645\|GO:0015695_0.643\|GO:0015807_0.636\|GO:1902475_0.636\|GO:0005342_0.634\|GO:0015804_0.634\|GO:0036094_0.634\|GO:0046943_0.633\|GO:0015802_0.627\|GO:0015803_0.627\|GO:1903826_0.627\|GO:1990822_0.627\|GO:0015171_0.624\|GO:0098772_0.624\|GO:0015101_0.616\|GO:0015179_0.616\|GO:0015175_0.613\|GO:0015174_0.608\|GO:0015190_0.608\|GO:0015658_0.608\|GO:0061459_0.608\|GO:0140299_0.608\|GO:0005622_0.551\|GO:0005737_0.551\|GO:0005773_0.551\|GO:0043226_0.551\|GO:0043227_0.551\|GO:0043229_0.551\|GO:0043231_0.551\|GO:0012505_0.520\|GO:0007154_0.437\|GO:0023052_0.432\|GO:0031090_0.421\|GO:0007165_0.412\|GO:0008152_0.384\|GO:0010646_0.383\|GO:0023051_0.380\|GO:0044237_0.366\|GO:0048518_0.366\|GO:0044238_0.363\|GO:0003824_0.361\|GO:0009058_0.361\|GO:0009966_0.358\|GO:0048522_0.358\|GO:0006950_0.357\|GO:0010647_0.351	IPR013057+168-276_355-614+	—	PF01490+168-276_355-614+Transmembrane_amino_acid_transporter_protein	—	PTHR22950+165-615+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-44	1.000	45-619	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.785	69417.300	7.048	4.000	15.832	15.994	34.572	65.428	8.724	7.108	47.334

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkorange	767.374	825.404	791.596	721.106	640.011	686.557	1832.792	795.287	216.936	834.778	569.989

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.290	-0.332	—	-0.204	—	1.426	—	1.344	—	—	—	—	—

No JSON data available for plots.

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