Hg_chrom1_TN10mRNA_1214
Organism: Heterodera glycines Gene Locus: chr1:13409777-13412334 Feature type: polypeptideProtein Sequence
Length: 580
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 1.363 | 0.94 | 0.892 | 1.379 | 0.84 | 0.616 | 0.776 | 0.92 | 1.328 | 0.862 | 1.217 | 1.58 | 0.862 | 1.161 | 1.182 | 1.159 | 0.888 | 0.531 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1157
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.116
|
0.013
|
0.651
|
0.211
|
0.273
|
0.234
|
0.073
|
0.202
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005969
|
1.000
|
1.000
|
Hsc_gene_21307.t1
|
Hsc_gene_21307.t1
|
— |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3422352.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.768|GO:0110165_0.765|GO:0005622_0.678|GO:0008150_0.614|GO:0043226_0.580|GO:0043229_0.564|GO:0005737_0.553|GO:0009987_0.510
|
IPR000210+163-268_164-239_164-270+|IPR011333+142-268_143-298+|IPR011705+275-385_277-384+|IPR012983+427-575+|IPR038648+418-579+
|
SM00225+164-270+|SM00875+275-385+
|
PF00651+163-268+BTB/POZ_domain|PF07707+277-384+BTB_And_C-terminal_Kelch|PF08005+427-575+PHR_domain
|
— |
PTHR45774+140-574+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-123
|
1.000
|
124-580
|
3no8_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
65449.080
|
5.349
|
-7.500
|
26.379
|
10.690
|
50.862
|
49.138
|
12.931
|
13.448
|
50.345
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey60
|
1515.114
|
1140.797
|
1156.660
|
1130.429
|
1446.962
|
1831.706
|
3077.706
|
2005.254
|
1006.373
|
1452.778
|
1261.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.211
|
-0.150
|
— |
0.325
|
0.354
|
0.760
|
— |
0.763
|
— | — | — | — | — |
No JSON data available for plots.