Hg_chrom1_TN10mRNA_1216
Organism: Heterodera glycines Gene Locus: chr1:13413871-13414816 Feature type: polypeptideProtein Sequence
Length: 178
(Signal peptide: 1-31)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.698 | 1.568 | 1.021 | 0.387 | 0.468 | 0.864 | 0.535 | 0.0 | 1.248 | 0.987 | 0.255 | 1.322 | 1.248 | 1.296 | 0.688 | 2.006 | 1.289 | 0.851 | 0.864 | 0.33 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1159
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-31
|
0.621
|
1.000
|
1.000
|
1.000
|
0.136
|
0.092
|
0.005
|
0.102
|
0.165
|
0.172
|
0.238
|
0.155
|
0.753
|
0.508
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005971
|
1.000
|
1.000
|
Hsc_gene_21309.t1
|
Hsc_gene_21309.t1
|
— | — |
KAI3422350.1 hypothetical protein GPALN_012873 [Globodera pallida]
|
KAK9992280
|
0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-88
|
2.000
|
1-36;89-178
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
18537.680
|
4.170
|
-6.000
|
13.483
|
6.742
|
45.506
|
54.494
|
5.056
|
8.427
|
66.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
412.119
|
139.944
|
1067.185
|
464.889
|
99.796
|
86.505
|
84.781
|
883.773
|
39.459
|
713.349
|
424.539
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.701
|
1.594
|
-1.090
|
-2.254
|
— | — |
3.254
|
-3.241
|
-4.293
|
— | — | — | — |