Hg_chrom1_TN10mRNA_1217
Organism: Heterodera glycines Gene Locus: chr1:13415553-13420456 Feature type: polypeptideProtein Sequence
Length: 697
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.851 | 1.001 | 0.913 | 0.544 | 1.506 | 1.472 | 0.786 | 1.148 | 1.212 | 0.911 | 0.956 | 1.519 | 1.395 | 0.938 | 1.288 | 1.148 | 0.823 | 0.652 | 0.773 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1160
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.765
|
0.031
|
0.011
|
0.366
|
0.097
|
0.047
|
0.039
|
0.004
|
0.052
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003034
|
2.000
|
1.000
|
Hsc_gene_21310.t1
|
Hsc_gene_21310.t1
|
— |
O16519.1 Gastrulation defective protein 1 [Caenorhabditis elegans]
|
KAI1719868.1 gastrulation defective protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.788|GO:0005575_0.722|GO:0009987_0.711|GO:0110165_0.704|GO:0005622_0.611|GO:0016020_0.584|GO:0043226_0.560|GO:0065007_0.537|GO:0050789_0.520|GO:0043229_0.516
|
IPR001680+168-206_214-253_265-308_275-308_275-317_322-363_339-363_369-408_376-410_377-408+|IPR015943+139-316_317-533+|IPR036322+175-525+|IPR051858+23-692+
|
SM00320+168-206_214-253_265-308_322-363_369-408+
|
PF00400+275-308_339-363_377-408+WD_domain,_G-beta_repeat
|
G3DSA:2.130.10.10:FF:001319+331-551+Gastrulation_defective_protein_1
|
PTHR16017+23-692+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-169;577-697
|
1.000
|
170-576
|
6r5x_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
78718.520
|
6.321
|
-2.000
|
28.981
|
10.760
|
52.080
|
47.920
|
14.921
|
14.060
|
47.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1144.805
|
1280.652
|
1273.081
|
1559.902
|
1674.669
|
1481.549
|
1807.308
|
1176.104
|
745.985
|
604.060
|
664.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.238
|
0.147
|
0.402
|
— |
-0.162
|
0.298
|
-0.440
|
0.764
|
— | — | — | — | — |
No JSON data available for plots.