SCN Proteipedia

Hg_chrom1_TN10mRNA_122

Organism: Heterodera glycines Gene Locus: chr1:832778-834927 Feature type: polypeptide

Protein Sequence

Length: 402

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.723	1.273	0.678	1.115	0.954	1.212	0.652	1.119	0.884	0.975	1.055	1.756	1.658	0.957	1.472	0.995	0.979	0.905	1.722	0.805	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_118	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	3.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRNNHSSFVLYRHNKR	34-56	0.954	—	—	—	—	0.000	—	—	0.341	0.412	0.035	0.533	0.246	0.102	0.305	0.053	0.208	0.236

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001030	4.000	1.000	Hsc_gene_25495.t1	Hsc_gene_25495.t1	—	Q9TR36.3 Phosphatidylinositol transfer protein beta isoform [Bos taurus]	KAI6214539.1 Phosphatidylinositol transfer protein [Aphelenchoides besseyi];KAI6236004.1 Phosphatidylinositol transfer protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005548\|GO:0015914	GO:0008150_0.863\|GO:0003674_0.823\|GO:0009987_0.803\|GO:0005488_0.750\|GO:0005575_0.712\|GO:0110165_0.704\|GO:0071840_0.655\|GO:0016043_0.654\|GO:0051179_0.642\|GO:0006810_0.636\|GO:0051234_0.636\|GO:0008289_0.622\|GO:0005543_0.618\|GO:0005622_0.617\|GO:0035091_0.614\|GO:0033036_0.610\|GO:0061024_0.608\|GO:0010876_0.598\|GO:0006869_0.593\|GO:0015748_0.593\|GO:0015914_0.593\|GO:0120009_0.593\|GO:0005215_0.579\|GO:0005319_0.576\|GO:0005548_0.576\|GO:0008526_0.576\|GO:0120013_0.576\|GO:0120014_0.576\|GO:0005737_0.552\|GO:0016020_0.550\|GO:0043226_0.534\|GO:0036094_0.515\|GO:0043167_0.514\|GO:0043227_0.504	IPR001666+150-393_165-184_238-258_351-366_371-390+\|IPR023393+150-399+	—	PF02121+150-393+Phosphatidylinositol_transfer_protein	G3DSA:3.30.530.20:FF:000028+150-396+Phosphatidylinositol_transfer_protein_5	PTHR10658+150-393+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	402-402	1.000	1-401	2a1l_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.788	46240.070	9.747	23.500	25.871	13.184	49.005	50.995	16.418	9.453	48.010

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	146.535	70.696	142.327	135.912	147.502	294.712	145.103	313.605	4.820	168.780	98.512

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.780	0.806	—	—	1.014	-1.010	—	-0.966	-5.251	5.040	—	—	—

No JSON data available for plots.

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