SCN Proteipedia

Hg_chrom1_TN10mRNA_1222

Organism: Heterodera glycines Gene Locus: chr1:13430082-13434524 Feature type: polypeptide

Protein Sequence

Length: 894

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.624	1.223	1.058	0.27	1.79	1.377	0.533	1.23	1.293	1.512	1.068	1.316	1.056	0.624	1.484	1.071	0.697	0.661	0.602	0.658	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1165	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-Not_Clustered	0.927

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	PVLKRIR,KSKKGEKE,KKVYAMKLLDKDKMIRR,RKYSISPEFEQIKFEKR,RRCNELTERCKMEIRSKNK	44-87	0.860	—	—	—	—	0.000	—	—	0.412	0.191	0.035	0.712	0.133	0.372	0.325	0.195	0.298	0.053

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005974	1.000	1.000	Hsc_gene_21315.t1	Hsc_gene_21315.t1	—	A8WVU9.2 Rho-associated protein kinase let-502 [Caenorhabditis briggsae]	KAI1728344.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.945\|GO:0005575_0.909\|GO:0110165_0.909\|GO:0009987_0.887\|GO:0005622_0.857\|GO:0065007_0.805\|GO:0050789_0.796\|GO:0003674_0.721\|GO:0016043_0.716\|GO:0071840_0.716\|GO:0050794_0.712\|GO:0043226_0.618\|GO:0005737_0.613\|GO:0006996_0.609\|GO:0016020_0.592\|GO:0043229_0.588\|GO:0003824_0.576\|GO:0016740_0.576\|GO:0016772_0.562\|GO:0032501_0.562\|GO:0140096_0.562\|GO:0050896_0.556\|GO:0016301_0.538\|GO:0032502_0.521\|GO:0048856_0.520\|GO:0004672_0.511\|GO:0016773_0.511	IPR000719+75-337_77-337+\|IPR000961+338-409_340-401+\|IPR008271+193-205+\|IPR011009+73-418+\|IPR017441+81-104+\|IPR050839+21-860+	SM00133+340-401+\|SM00220+75-337+	PF00069+77-337+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000047+159-359+Rho-associated_protein_kinase_1\|G3DSA:3.30.200.20:FF:000017+23-170+Non-specific_serine/threonine_protein_kinase	PTHR22988+21-860+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	447-496;583-719;861-894	3.000	1-446;497-582;720-860	4w7p_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.521	103324.840	5.865	-9.000	33.333	9.284	55.705	44.295	16.779	16.555	41.051

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	yellow	1787.547	1530.366	1342.529	1669.052	2167.333	2413.358	2381.881	2844.894	1896.441	1017.158	1393.993

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.419	—	0.423	0.345	0.170	—	—	—	—	—	—	—	—

No JSON data available for plots.

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