SCN Proteipedia

Hg_chrom1_TN10mRNA_1225

Organism: Heterodera glycines Gene Locus: chr1:13446076-13451479 Feature type: polypeptide

Protein Sequence

Length: 1,037

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.875	0.785	1.017	0.366	1.639	0.94	0.574	1.157	1.221	1.303	1.198	1.588	0.911	0.76	1.299	0.937	0.98	0.862	0.668	0.993	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1168	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.984

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRAR,KRIR,AKSGREKKRTRNTRKR	—	—	—	—	—	—	0.000	—	—	0.872	0.053	0.011	0.297	0.057	0.046	0.095	0.019	0.051	0.014

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005977	1.000	1.000	Hsc_gene_21317.t1	Hsc_gene_21317.t1	—	O45244.2 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 [Caenorhabditis elegans]	KAH7727285.1 MRNA splicing factor RNA helicase (Cdc28) [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0005524	GO:0005575_0.884\|GO:0110165_0.884\|GO:0005622_0.832\|GO:0016020_0.806\|GO:0008150_0.800\|GO:0043226_0.784\|GO:0043229_0.750\|GO:0009987_0.724\|GO:0043227_0.710\|GO:0043231_0.672\|GO:0005634_0.562\|GO:0003674_0.559\|GO:0008152_0.532\|GO:0044238_0.528\|GO:0044237_0.518\|GO:0043170_0.516\|GO:0009058_0.514\|GO:0044249_0.502	IPR001650+584-765_598-724_616-724+\|IPR002464+508-517+\|IPR007502+785-876+\|IPR011545+399-549+\|IPR011709+932-1009+\|IPR014001+390-575_402-566+\|IPR027417+350-568_385-917_569-745+\|IPR048333+786-813+	SM00487+390-575+\|SM00490+616-724+\|SM00847+785-876+	PF00270+399-549+DEAD/DEAH_box_helicase\|PF00271+598-724+Helicase_conserved_C-terminal_domain\|PF04408+786-813+Helicase_associated_domain_(HA2),_winged-helix\|PF07717+932-1009+Oligonucleotide/oligosaccharide-binding_(OB)-fold\|PF21010+815-875+Helicase_associated_domain_(HA2),_ratchet-like	G3DSA:1.20.120.1080:FF:000001+769-863+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase\|G3DSA:3.40.50.300:FF:000007+569-745+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase\|G3DSA:3.40.50.300:FF:000726+349-568+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase	PTHR18934+189-1019+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	55-263;1025-1037	2.000	1-54;264-1024	5xjc_Y	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.508	118217.780	6.522	0.000	32.015	9.836	51.591	48.409	16.586	15.429	44.552

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	blue	3211.510	2606.660	1709.987	1566.570	1719.217	1436.010	2178.195	1519.651	4079.842	6214.364	5299.569

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.838	-0.872	—	0.102	-0.245	0.612	—	0.662	—	—	—	—	—

No JSON data available for plots.

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