Hg_chrom1_TN10mRNA_1226
Organism: Heterodera glycines Gene Locus: chr1:13460146-13463703 Feature type: polypeptideProtein Sequence
Length: 673
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 1.106 | 0.81 | 0.82 | 1.585 | 1.867 | 0.761 | 1.189 | 0.825 | 1.044 | 0.81 | 1.486 | 0.867 | 0.829 | 1.547 | 1.634 | 0.853 | 0.63 | 0.343 | 0.175 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1169
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.525
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
GRKKVRKDGKD
|
3-26
|
0.992
|
17-38
|
1.000
|
— | — |
0.000
|
— | — |
0.389
|
0.173
|
0.022
|
0.696
|
0.075
|
0.121
|
0.257
|
0.154
|
0.220
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001075
|
1.000
|
4.000
|
Hsc_gene_21318.t1;Hsc_gene_21318.t2;Hsc_gene_21318.t3;Hsc_gene_21318.t4
|
Hsc_gene_21318.t1;Hsc_gene_21318.t4
|
— |
Q0V989.1 Coiled-coil domain-containing protein 85C [Xenopus tropicalis]
|
KAI1717704.1 CCDC85 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.828|GO:0110165_0.827|GO:0008150_0.597|GO:0030054_0.516
|
IPR019359+46-424_73-248+
|
— |
PF10226+73-248+CCDC85_family
|
— |
PTHR13546+46-424+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-72;307-350;402-673
|
2.000
|
73-306;351-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
74821.270
|
6.603
|
1.000
|
29.272
|
6.538
|
57.949
|
42.051
|
15.305
|
13.967
|
49.777
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
545.224
|
273.928
|
289.514
|
345.448
|
593.865
|
532.032
|
786.860
|
198.091
|
400.798
|
952.355
|
715.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.365
|
0.748
|
— |
0.575
|
-1.532
|
2.134
|
— | — | — | — | — |
No JSON data available for plots.