Hg_chrom1_TN10mRNA_123
Organism: Heterodera glycines Gene Locus: chr1:835001-839259 Feature type: polypeptideProtein Sequence
Length: 331
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 0.984 | 0.824 | 0.417 | 0.705 | 1.317 | 0.683 | 1.964 | 1.343 | 1.756 | 0.778 | 1.599 | 1.678 | 0.581 | 1.418 | 0.95 | 0.693 | 0.961 | 1.394 | 0.622 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_119
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-23
|
0.970
|
1.000
|
0.000
|
0.000
|
0.065
|
0.220
|
0.025
|
0.236
|
0.226
|
0.133
|
0.188
|
0.009
|
0.071
|
0.799
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_747.t1;Hsc_gene_747.t2
|
— |
Q9XU75.2 Putative carboxypeptidase suro-1 [Caenorhabditis elegans]
|
AVA09650.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.668|GO:0008150_0.630|GO:0005575_0.621|GO:0110165_0.614|GO:0003824_0.552
|
IPR000834+123-331_169-257+|IPR003146+40-113+|IPR036990+35-128+
|
SM00631+123-331+
|
PF00246+169-257+Zinc_carboxypeptidase|PF02244+40-113+Carboxypeptidase_activation_peptide
|
G3DSA:3.30.70.340:FF:000002+35-120+Carboxypeptidase_A
|
PTHR11705+8-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-331
|
1zli_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
37910.060
|
10.068
|
17.500
|
24.773
|
13.897
|
45.015
|
54.985
|
16.012
|
8.761
|
42.900
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1392.664
|
199.329
|
286.120
|
1346.716
|
2517.716
|
4694.015
|
580.018
|
664.149
|
25.837
|
2215.501
|
1277.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.291
|
2.619
|
2.345
|
0.871
|
0.915
|
-3.010
|
-2.930
|
— |
-6.536
|
5.902
|
— | — | — |