Hg_chrom1_TN10mRNA_1231
Organism: Heterodera glycines Gene Locus: chr1:13477440-13479554 Feature type: polypeptideProtein Sequence
Length: 77
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.0 | 1.812 | 0.708 | 0.448 | 1.299 | 0.666 | 1.082 | 1.299 | 2.02 | 0.702 | 1.181 | 4.584 | 0.722 | 0.999 | 1.06 | 0.928 | 0.426 | 1.771 | 0.0 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1174
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.682
|
0.105
|
0.028
|
0.595
|
0.179
|
0.330
|
0.181
|
0.003
|
0.048
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005980
|
1.000
|
1.000
|
Hsc_gene_21321.t1
|
Hsc_gene_21321.t1
|
— |
Q9N4G9.1 Probable small nuclear ribonucleoprotein G [Caenorhabditis elegans]
|
KAI3422341.1 putative small nuclear ribonucleoprotein G [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000387|GO:0003723|GO:0005681
|
GO:0005575_0.885|GO:0110165_0.879|GO:0005622_0.775|GO:0008150_0.733|GO:0043226_0.723|GO:0043229_0.722|GO:0016020_0.684|GO:0009987_0.636|GO:0043227_0.624|GO:0043231_0.620|GO:0005737_0.616|GO:0032991_0.536
|
IPR001163+7-72_8-72+|IPR010920+7-74+|IPR034098+5-74+|IPR044641+2-76+|IPR047575+4-76+
|
SM00651+7-72+
|
PF01423+8-72+LSM_domain
|
G3DSA:2.30.30.100:FF:000099+1-77+Small_nuclear_ribonucleoprotein_G
|
PTHR10553+2-76+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15
|
1.000
|
16-77
|
8ro1_n
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
8657.140
|
8.044
|
2.000
|
27.273
|
6.494
|
46.753
|
53.247
|
15.584
|
11.688
|
48.052
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1609.188
|
827.987
|
1008.519
|
2102.832
|
2367.024
|
1611.565
|
1344.365
|
880.970
|
945.495
|
2527.351
|
1849.412
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.208
|
1.170
|
0.138
|
-0.539
|
-0.253
|
-0.976
|
0.751
|
-1.520
|
— | — | — | — |
No JSON data available for plots.