Hg_chrom1_TN10mRNA_1234
Organism: Heterodera glycines Gene Locus: chr1:13484465-13487470 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 0.831 | 0.771 | 0.308 | 2.79 | 1.259 | 0.903 | 0.67 | 0.744 | 1.056 | 1.15 | 1.838 | 0.868 | 0.429 | 2.232 | 0.829 | 0.622 | 0.609 | 1.03 | 0.394 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1177
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKMVAELEEKWTKSRRE,RRKESVGSEEEWGRREKE,RRVEELEHILNETNREAKK,RREEKIKELIDQIGDKERK
|
— | — |
34-74
|
0.772
|
— | — |
0.000
|
— | — |
0.455
|
0.135
|
0.004
|
0.718
|
0.064
|
0.082
|
0.119
|
0.005
|
0.162
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005982
|
1.000
|
1.000
|
Hsc_gene_2672.t1
|
Hsc_gene_2672.t1
|
— | — |
KAH7695108.1 Protein C27H5.2 b, partial [Aphelenchus avenae]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR041105+19-85+
|
— |
PF18694+19-85+TAR_DNA-binding_protein_43,_N-terminal_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-448
|
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
52099.220
|
5.286
|
-8.000
|
40.848
|
7.143
|
58.929
|
41.071
|
19.866
|
20.982
|
38.393
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
435.471
|
130.685
|
179.240
|
66.246
|
165.135
|
643.848
|
267.588
|
142.867
|
835.449
|
680.244
|
746.761
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.227
|
-1.117
|
-1.327
|
1.285
|
1.978
|
-1.256
|
-2.279
|
1.049
|
— |
-3.487
|
— | — | — |
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