SCN Proteipedia

Hg_chrom1_TN10mRNA_1235

Organism: Heterodera glycines Gene Locus: chr1:13487477-13488980 Feature type: polypeptide

Protein Sequence

Length: 353

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.758	0.593	0.618	1.465	0.567	1.525	0.776	1.983	0.818	1.11	0.644	1.5	1.102	1.634	1.561	2.064	0.789	0.515	0.436	0.417	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1178	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.853

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKR,RRRK	—	—	39-67	0.996	—	—	0.000	—	—	0.899	0.187	0.004	0.373	0.036	0.062	0.045	0.007	0.056	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005983	1.000	1.000	Hsc_gene_2671.t1	Hsc_gene_2671.t1	—	Q21272.1 Paired box protein 1 homolog [Caenorhabditis elegans]	KAF7635390.1 Paired domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006355	GO:0008150_0.954\|GO:0005575_0.832\|GO:0009987_0.827\|GO:0110165_0.826\|GO:0065007_0.784\|GO:0032502_0.779\|GO:0048856_0.779\|GO:0005622_0.777\|GO:0050789_0.751\|GO:0050794_0.748\|GO:0043226_0.738\|GO:0043229_0.728\|GO:0032501_0.727\|GO:0016020_0.687\|GO:0003674_0.647\|GO:0005488_0.647\|GO:0007275_0.646\|GO:0043227_0.630\|GO:0043231_0.625\|GO:0005634_0.613\|GO:0008152_0.600\|GO:0019222_0.600\|GO:0031323_0.600\|GO:0044237_0.600\|GO:0009058_0.594\|GO:0009059_0.594\|GO:0010467_0.594\|GO:0043170_0.594\|GO:0044249_0.594\|GO:0048513_0.588\|GO:0009653_0.584\|GO:0044238_0.583\|GO:0080090_0.583\|GO:0060255_0.582\|GO:0006139_0.581\|GO:0016070_0.581\|GO:0032774_0.581\|GO:0034654_0.581\|GO:0090304_0.581\|GO:0141187_0.581\|GO:0009889_0.570\|GO:0010468_0.570\|GO:0010556_0.570\|GO:0031326_0.570\|GO:0003676_0.565\|GO:0006351_0.565\|GO:0097159_0.565\|GO:0019219_0.550\|GO:0051252_0.550\|GO:2001141_0.542\|GO:0003677_0.539\|GO:0043565_0.539\|GO:0006355_0.534\|GO:0048869_0.531\|GO:0030154_0.529\|GO:0048518_0.524\|GO:0048522_0.519\|GO:0048731_0.519\|GO:0003690_0.516\|GO:1990837_0.516	IPR001523+260-352_260-353_264-279_264-326_282-300_302-319+\|IPR009057+263-324+\|IPR036388+263-326+\|IPR043565+258-324+	SM00351+260-352+	PF00292+264-326+'Paired_box'_domain	—	PTHR45636+258-324+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	225-273;319-353	2.000	1-224;274-318	1mdm_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.947	38664.950	9.749	25.000	22.663	9.915	50.425	49.575	15.864	6.799	54.391

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	103.791	88.186	7.111	7.285	92.491	631.439	57.679	164.729	4.112	57.658	34.709

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-3.864	-3.732	—	3.633	2.785	-3.441	-2.054	-1.364	—	—	—	—	—

No JSON data available for plots.

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