Hg_chrom1_TN10mRNA_1236
Organism: Heterodera glycines Gene Locus: chr1:13489472-13492776 Feature type: polypeptideProtein Sequence
Length: 604
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 1.001 | 1.114 | 0.514 | 1.325 | 0.976 | 0.926 | 1.159 | 1.325 | 1.163 | 1.003 | 1.071 | 1.426 | 0.891 | 1.52 | 0.781 | 1.031 | 0.828 | 0.127 | 0.536 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1179
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRELERTTDGEYWKTRKT,NRREQSKSREREKRMRSDLLGNRVKPKALKPEKFM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.698
|
0.109
|
0.012
|
0.563
|
0.070
|
0.037
|
0.083
|
0.006
|
0.053
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005984
|
1.000
|
1.000
|
Hsc_gene_2670.t1
|
Hsc_gene_2670.t1
|
— |
Q3MSQ8.1 Probable ATP-dependent RNA helicase DDX4 [Pelophylax lessonae]
|
KAI1726250.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.800|GO:0110165_0.798|GO:0005622_0.738|GO:0008150_0.723|GO:0003674_0.692|GO:0005737_0.642|GO:0043226_0.628|GO:0043229_0.613|GO:0009987_0.609|GO:0005488_0.563
|
IPR000629+349-357+|IPR001650+453-600_460-558_475-558+|IPR011545+215-393+|IPR014001+210-422_223-406+|IPR014014+191-219+|IPR027417+156-407_271-573_408-603+
|
SM00487+210-422+|SM00490+475-558+
|
PF00270+215-393+DEAD/DEAH_box_helicase|PF00271+460-558+Helicase_conserved_C-terminal_domain
|
— |
PTHR47958+184-588+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-155
|
1.000
|
156-604
|
4px9_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
67637.830
|
7.487
|
7.000
|
30.464
|
9.437
|
50.331
|
49.669
|
16.391
|
14.073
|
48.344
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightgreen
|
1425.651
|
1358.289
|
1031.762
|
1949.232
|
1953.136
|
1334.783
|
2016.690
|
734.804
|
1291.007
|
1376.957
|
1340.121
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.627
|
0.384
|
1.028
|
— |
-0.534
|
0.606
|
-0.968
|
1.600
|
— | — | — | — | — |
No JSON data available for plots.