Hg_chrom1_TN10mRNA_1239
Organism: Heterodera glycines Gene Locus: chr1:13496753-13501660 Feature type: polypeptideProtein Sequence
Length: 992
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.641 | 0.513 | 0.382 | 1.243 | 2.43 | 0.936 | 0.554 | 0.739 | 0.79 | 1.146 | 0.652 | 0.98 | 0.931 | 1.708 | 1.382 | 1.091 | 0.489 | 0.698 | 0.504 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1182
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRENEQKTEIIERQRER,NKRKSGGKTKEQPKAKQQKKEEQRRTTAKGEEQNAKKVKLIKQIEKGSKEKRKR
|
— | — |
68-97
|
0.994
|
— | — |
0.000
|
— | — |
0.406
|
0.132
|
0.012
|
0.719
|
0.072
|
0.042
|
0.070
|
0.183
|
0.272
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005987
|
1.000
|
1.000
|
Hsc_gene_2667.t1
|
Hsc_gene_2667.t1
|
— | — |
XP_045095869.1 Protein CBG16341 [Caenorhabditis briggsae];CAP34120.2 Protein CBG16341 [Caenorhabditis briggsae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-992
|
1.000
|
1-84
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
111182.310
|
10.622
|
61.500
|
27.319
|
7.258
|
60.181
|
39.819
|
17.036
|
10.282
|
49.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
2081.684
|
1570.064
|
828.962
|
265.477
|
224.290
|
245.258
|
413.898
|
480.462
|
64.879
|
7548.055
|
4340.980
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.152
|
-2.701
|
-1.533
|
-0.274
|
— |
0.764
|
0.867
|
— |
-6.995
|
— |
-4.594
|
— | — |
No JSON data available for plots.