Hg_chrom1_TN10mRNA_124
Organism: Heterodera glycines Gene Locus: chr1:841127-844971 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.247 | 0.802 | 1.115 | 0.793 | 0.702 | 2.456 | 0.411 | 1.916 | 1.192 | 0.984 | 1.219 | 1.578 | 0.639 | 0.737 | 1.407 | 1.149 | 0.565 | 0.929 | 0.884 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_120
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.323
|
0.249
|
0.013
|
0.577
|
0.087
|
0.340
|
0.310
|
0.053
|
0.327
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001636
|
3.000
|
1.000
|
Hsc_gene_23249.t1
|
Hsc_gene_23249.t1
|
— |
B0S6J3.1 SLIT-ROBO Rho GTPase-activating protein 2 [Danio rerio]
|
KAI1724883.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.852|GO:0110165_0.842|GO:0008150_0.780|GO:0009987_0.730|GO:0005622_0.661|GO:0065007_0.651|GO:0050789_0.643|GO:0050794_0.633|GO:0003674_0.564|GO:0005488_0.560|GO:0032501_0.524|GO:0032502_0.518|GO:0048856_0.518|GO:0005515_0.503
|
IPR001060+29-109+|IPR027267+22-164_23-168+|IPR051627+8-167+
|
— |
PF00611+29-109+Fes/CIP4,_and_EFC/F-BAR_homology_domain
|
— |
PTHR14166+8-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
163-261
|
1.000
|
1-162
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
29386.570
|
10.110
|
17.000
|
29.119
|
8.429
|
53.640
|
46.360
|
18.774
|
10.345
|
47.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
582.647
|
621.524
|
911.249
|
537.886
|
446.011
|
520.451
|
214.153
|
562.550
|
129.064
|
1022.096
|
639.368
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.323
|
-0.346
|
-0.652
|
-0.302
|
0.237
|
-1.272
|
— |
-1.252
|
— | — | — | — |
6.719
|
No JSON data available for plots.