SCN Proteipedia

Hg_chrom1_TN10mRNA_1240

Organism: Heterodera glycines Gene Locus: chr1:13505451-13510355 Feature type: polypeptide

Protein Sequence

Length: 1,014

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.803	1.216	1.004	0.612	2.038	0.86	0.517	1.381	1.008	0.906	0.911	1.508	1.178	0.986	1.55	1.254	0.728	0.732	1.138	0.464	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1183	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	ERKRKNRKNKA,RKGATNRIQRERPKKN,RKNKAMMEEEEEKERKN,RRPLFPKSKFLRKAQKLRK,RKNKLMMEEEEEEEERKRK,RKNRKNKAMMEEEEEKERK	—	—	33-54	1.000	—	—	0.000	—	—	0.248	0.191	0.022	0.541	0.192	0.183	0.261	0.145	0.462	0.100

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003036	1.000	2.000	Hsc_gene_2665.t1;Hsc_gene_2665.t2	Hsc_gene_2665.t1;Hsc_gene_2665.t2	—	Q9Y5P8.2 Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta [Homo sapiens]	KAI1703307.1 EF-hand domain pair domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509	GO:0005575_0.954\|GO:0008150_0.923\|GO:0009987_0.894\|GO:0065007_0.820\|GO:0050789_0.804\|GO:0050794_0.781\|GO:0110165_0.667\|GO:0005622_0.636\|GO:0043226_0.605\|GO:0016020_0.604\|GO:0043229_0.557\|GO:0003674_0.555\|GO:0005488_0.555\|GO:0005515_0.552\|GO:0043227_0.516	IPR002048+866-901+\|IPR011992+645-753_765-938+\|IPR018247+879-891+\|IPR041534+688-765+	—	PF17958+688-765+EF-hand_domain	G3DSA:1.10.238.10:FF:000025+776-961+serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_alpha\|G3DSA:1.10.238.220:FF:000001+688-775+Serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_alpha	PTHR14095+111-1008+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-558;999-1014	1.000	559-998	4i5n_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.547	116155.590	5.086	-28.000	34.122	10.059	55.917	44.083	16.371	17.751	46.943

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1512.524	2972.122	2982.118	1422.663	1132.267	1456.113	1563.863	1978.836	399.658	1252.059	886.744

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.225	-1.200	-0.959	-0.361	0.378	—	0.340	—	—	—	—	—	—

No JSON data available for plots.

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