Hg_chrom1_TN10mRNA_1241
Organism: Heterodera glycines Gene Locus: chr1:13510621-13513959 Feature type: polypeptideProtein Sequence
Length: 750
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.194 | 0.775 | 0.848 | 0.506 | 1.289 | 1.607 | 0.492 | 1.4 | 1.096 | 1.171 | 0.727 | 1.255 | 1.481 | 1.308 | 1.224 | 1.048 | 0.678 | 0.99 | 0.513 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1184
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.284
|
0.156
|
0.011
|
0.663
|
0.086
|
0.240
|
0.195
|
0.013
|
0.477
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005988
|
1.000
|
1.000
|
Hsc_gene_2664.t1
|
Hsc_gene_2664.t1
|
— |
P26039.2 Talin-1 [Mus musculus]
|
KAI1717323.1 FERM central domain-containing protein [Ditylenchus destructor]
|
No
|
-0.530
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001726|GO:0003779|GO:0005200|GO:0005856|GO:0005925
|
GO:0005575_0.875|GO:0110165_0.867|GO:0008150_0.753|GO:0009987_0.708|GO:0005622_0.563|GO:0016043_0.549|GO:0071840_0.549|GO:0016020_0.523
|
IPR000299+1-228+|IPR002404+142-224+|IPR011993+135-230+|IPR014352+23-134+|IPR015224+508-606+|IPR019748+27-140_38-132+|IPR035963+24-135+|IPR035964+617-716+|IPR036476+499-607+
|
— |
PF00373+27-140+FERM_central_domain|PF02174+142-224+PTB_domain_(IRS-1_type)|PF09141+508-606+Talin,_middle_domain
|
G3DSA:2.30.29.30:FF:000028+135-230+Talin_2
|
PTHR19981+19-746+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23;266-417
|
2.000
|
24-265;418-750
|
6r9t_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
83949.540
|
6.395
|
-1.500
|
26.000
|
10.800
|
47.067
|
52.933
|
13.600
|
12.400
|
48.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1203.953
|
1053.387
|
2578.762
|
417.790
|
124.954
|
448.175
|
66.970
|
4036.386
|
138.432
|
1891.063
|
1139.936
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.063
|
-1.472
|
-2.517
|
-1.775
|
1.857
|
-2.730
|
3.071
|
-5.770
|
-3.847
|
— | — | — | — |
No JSON data available for plots.