Hg_chrom1_TN10mRNA_1243
Organism: Heterodera glycines Gene Locus: chr1:13517196-13518303 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.065 | 0.533 | 0.972 | 0.395 | 0.954 | 0.587 | 1.136 | 0.954 | 1.272 | 1.135 | 0.81 | 2.245 | 2.014 | 1.321 | 1.48 | 0.872 | 0.438 | 0.925 | 0.881 | 0.561 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1186
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.467
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.283
|
0.633
|
0.241
|
0.443
|
0.372
|
0.305
|
0.305
|
0.027
|
0.104
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005990
|
1.000
|
1.000
|
Hsc_gene_2662.t1
|
Hsc_gene_2662.t1
|
— |
Q9N4Z0.2 L-2-hydroxyglutarate dehydrogenase, mitochondrial [Caenorhabditis elegans]
|
KAF7635413.1 DAO domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.864|GO:0110165_0.851|GO:0005622_0.794|GO:0016020_0.789|GO:0005737_0.764|GO:0008150_0.673|GO:0003674_0.623|GO:0043226_0.601|GO:0043229_0.599|GO:0009987_0.591|GO:0043227_0.580|GO:0043231_0.565|GO:0008152_0.557|GO:0044237_0.527|GO:0003824_0.523
|
IPR006076+2-254+|IPR036188+2-107+
|
— |
PF01266+2-254+FAD_dependent_oxidoreductase
|
— |
PTHR43104+2-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-262
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
29013.610
|
9.065
|
6.500
|
25.573
|
12.214
|
38.931
|
61.069
|
14.504
|
11.069
|
49.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
243.878
|
350.102
|
355.880
|
412.174
|
339.783
|
300.586
|
361.467
|
347.609
|
67.498
|
90.991
|
80.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.205
|
— |
0.320
|
-0.310
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.