SCN Proteipedia

Hg_chrom1_TN10mRNA_1245

Organism: Heterodera glycines Gene Locus: chr1:13526885-13549113 Feature type: polypeptide

Protein Sequence

Length: 4,100

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.927	0.885	0.772	0.471	2.033	2.333	0.546	1.012	0.873	1.384	0.961	2.066	0.711	0.704	1.389	0.909	0.78	0.691	0.807	0.273	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1188	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.491

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKRK,KRRK,KRSR,AAAED,RKSSSSSRSRSRKLRN,KRWENLNEWMEKREKV,RRQTALQNQINGIQRRHLK,RRSVALLGKRMSDLKMKLK	33-54	0.982	—	—	—	—	0.000	—	—	0.202	0.107	0.019	0.719	0.125	0.182	0.314	0.011	0.526	0.113

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001031	3.000	2.000	Hsc_gene_2657.t1;Hsc_gene_2657.t2	Hsc_gene_2657.t1;Hsc_gene_2657.t2	—	Q9TW65.2 Dystrophin-1 [Caenorhabditis elegans]	KAH7728515.1 DYS-1 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0008270	GO:0005575_0.916\|GO:0110165_0.903\|GO:0008150_0.891\|GO:0005622_0.842\|GO:0009987_0.820\|GO:0016020_0.793\|GO:0043226_0.793\|GO:0065007_0.745\|GO:0050789_0.735\|GO:0043229_0.730\|GO:0005737_0.702\|GO:0032501_0.696\|GO:0071944_0.693\|GO:0005886_0.692\|GO:0016043_0.678\|GO:0050794_0.678\|GO:0071840_0.678\|GO:0043228_0.665\|GO:0043232_0.665\|GO:0032502_0.655\|GO:0048856_0.655\|GO:0003674_0.633\|GO:0005488_0.633\|GO:0005515_0.600\|GO:0032991_0.574\|GO:0030054_0.509	IPR000433+3580-3625_3581-3624_3581-3637_3586-3613+\|IPR001202+3326-3360_3327-3360_3330-3360_3332-3358+\|IPR002017+392-503+\|IPR011992+3357-3482_3485-3578+\|IPR015153+3362-3481+\|IPR015154+3485-3574+\|IPR018159+392-626_401-502_509-626_633-741_2424-2529_2832-2932_2939-3063_3070-3201_3208-3310+\|IPR036020+3318-3356+\|IPR036872+1-80_2-70+\|IPR043145+3575-3634+\|IPR050774+3164-4080+	SM00150+401-502_509-626_633-741_2424-2529_2832-2932_2939-3063_3070-3201_3208-3310+\|SM00291+3580-3625+\|SM00456+3327-3360+	PF00435+392-503+Spectrin_repeat\|PF00569+3581-3624+Zinc_finger,_ZZ_type\|PF09068+3362-3481+EF_hand\|PF09069+3485-3574+EF-hand	—	PTHR12268+3164-4080+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	77-466;640-1247;1750-1797;1854-1916;2097-2360;2631-2737;2946-3065;3664-4100	8.000	1-76;467-639;1248-1749;1798-1853;1917-2096;2361-2630;2738-2945;3066-3663	8yt8_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.674	468069.660	5.105	-93.500	31.610	6.561	55.634	44.366	15.171	16.439	41.317

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2869.112	3568.577	4823.258	2239.182	1929.734	3024.821	3285.235	2955.266	1771.729	3038.789	2495.763

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.205	-0.810	-0.998	-0.246	0.663	0.129	—	0.294	—	—	—	—	—

No JSON data available for plots.

Back to Browser