Hg_chrom1_TN10mRNA_1247
Organism: Heterodera glycines Gene Locus: chr1:13574144-13576136 Feature type: polypeptideProtein Sequence
Length: 395
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.854 | 1.236 | 0.829 | 0.96 | 1.35 | 0.974 | 0.964 | 0.886 | 1.688 | 0.958 | 1.266 | 1.936 | 0.703 | 0.682 | 1.447 | 0.723 | 0.789 | 0.844 | 0.974 | 0.596 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1190
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
AKRKRNGA,KREIEADAERKKKCD
|
— | — | — | — |
1-24
|
0.827
|
1.000
|
0.000
|
0.000
|
0.188
|
0.292
|
0.026
|
0.211
|
0.208
|
0.034
|
0.113
|
0.009
|
0.213
|
0.914
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005991
|
1.000
|
1.000
|
Hsc_gene_2656.t1
|
Hsc_gene_2656.t1
|
— |
Q8I6K0.1 Phenoloxidase-activating factor 3 [Holotrichia diomphalia]
|
KAI1714408.1 trypsin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.853|GO:0005575_0.687|GO:0003674_0.677|GO:0110165_0.659|GO:0008152_0.532|GO:0044238_0.514|GO:0003824_0.510|GO:0043170_0.503
|
IPR001254+56-358_56-363_57-110+|IPR001314+87-102_172-186_296-308+|IPR009003+54-359+|IPR043504+50-361+
|
SM00020+56-358+
|
PF00089+57-110+Trypsin
|
— |
PTHR24253+56-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
373-395
|
1.000
|
1-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
44304.000
|
9.081
|
14.500
|
29.873
|
7.595
|
48.861
|
51.139
|
17.215
|
12.658
|
47.089
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
946.051
|
49.176
|
69.489
|
37.929
|
21.709
|
761.194
|
51.772
|
9067.125
|
292.101
|
147.999
|
209.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.512
|
-0.764
|
-0.840
|
5.151
|
-3.867
|
3.475
|
-7.310
|
— | — | — | — | — |