Hg_chrom1_TN10mRNA_125
Organism: Heterodera glycines Gene Locus: chr1:853114-857320 Feature type: polypeptideProtein Sequence
Length: 592
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 1.021 | 1.136 | 0.757 | 1.52 | 0.866 | 0.603 | 0.76 | 1.502 | 1.187 | 1.356 | 1.292 | 1.924 | 0.65 | 0.862 | 1.207 | 0.498 | 0.87 | 1.299 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_121
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.652
|
0.146
|
0.017
|
0.531
|
0.150
|
0.134
|
0.059
|
0.027
|
0.118
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002877
|
1.000
|
2.000
|
Hsc_gene_8195.t1;Hsc_gene_8195.t2
|
— | — |
Q5TZE1.1 BTB/POZ domain-containing protein 6-B [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.769|GO:0110165_0.767|GO:0005622_0.705|GO:0008150_0.667|GO:0005737_0.621|GO:0043226_0.572|GO:0043229_0.565|GO:0009987_0.513
|
IPR000210+15-124_24-101_24-132+|IPR002083+300-407_300-426_451-556_468-576+|IPR008974+289-433_434-586+|IPR011333+2-158_4-123+|IPR011705+138-246_141-243+
|
SM00061+300-407_451-556+|SM00225+24-132+|SM00875+138-246+
|
PF00651+15-124+BTB/POZ_domain|PF00917+468-576+MATH_domain|PF07707+141-243+BTB_And_C-terminal_Kelch|PF22486+300-426+MATH_domain
|
— |
PTHR45774+7-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-592
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
67799.540
|
5.308
|
-8.500
|
30.068
|
12.331
|
49.324
|
50.676
|
14.696
|
15.372
|
44.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
87.129
|
10.283
|
72.737
|
52.986
|
35.429
|
27.590
|
31.452
|
30.695
|
2.056
|
281.710
|
161.858
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.595
|
2.230
|
-0.350
|
-0.616
|
— | — | — | — |
-7.146
|
4.787
|
— | — | — |
No JSON data available for plots.