Hg_chrom1_TN10mRNA_1250
Organism: Heterodera glycines Gene Locus: chr1:13580937-13590982 Feature type: polypeptideProtein Sequence
Length: 1,621
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.933 | 0.796 | 0.872 | 1.1 | 1.091 | 0.712 | 1.388 | 0.562 | 1.442 | 0.673 | 1.379 | 1.388 | 1.127 | 1.8 | 1.269 | 0.9 | 0.813 | 1.091 | 0.399 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1193
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— |
KRRR,LGEV,RLGKRRP,RRLSFAEPIAKLPKK,KRRPAEWKDVKLRRKGEK,RRKGEKTSNRKRGRRAPK,RRGGTLPANCRVQKKRAE,KRAPRHRRSKKHRRSRGH,KKKGRRGGTLPANCRVQKK,KKGRRGGTLPANCRVQKKR,RRQSAPLGDLLRDLQRKGR
|
— | — |
36-56
|
0.980
|
1-32
|
— |
0.998
|
— |
0.000
|
0.334
|
0.330
|
0.013
|
0.230
|
0.099
|
0.066
|
0.199
|
0.217
|
0.207
|
0.695
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000501
|
2.000
|
5.000
|
Hsc_gene_2659.t1;Hsc_gene_2659.t2;Hsc_gene_2659.t3;Hsc_gene_2659.t4;Hsc_gene_2659.t5
|
Hsc_gene_2661.t1
|
— | — |
KAH7702253.1 Protein F13D2.1 b [Aphelenchus avenae]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
302-404;613-721;1331-1418;1607-1621
|
4.000
|
1-301;405-612;722-1330;1419-1606
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
182530.900
|
9.096
|
59.500
|
27.020
|
10.549
|
49.661
|
50.339
|
16.039
|
10.981
|
49.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2646.853
|
2768.784
|
3847.913
|
2555.648
|
1936.547
|
2663.227
|
2629.581
|
4905.462
|
1842.903
|
2207.617
|
2051.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.246
|
-0.253
|
-0.482
|
-0.433
|
0.475
|
— |
0.778
|
-0.759
|
— | — | — | — | — |