Hg_chrom1_TN10mRNA_1256
Organism: Heterodera glycines Gene Locus: chr1:13604464-13605785 Feature type: polypeptideProtein Sequence
Length: 294
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.187 | 1.299 | 0.117 | 1.19 | 2.006 | 0.364 | 0.34 | 0.907 | 1.011 | 0.515 | 1.401 | 1.795 | 1.962 | 1.388 | 1.215 | 1.004 | 0.67 | 0.262 | 0.4 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1199
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
26-Not_Clustered
|
0.384
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus|extracellular
|
— | — | — | — | — | — |
1-18
|
0.994
|
1.000
|
0.000
|
0.000
|
0.541
|
0.377
|
0.013
|
0.432
|
0.143
|
0.075
|
0.120
|
0.034
|
0.223
|
0.712
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005997
|
1.000
|
1.000
|
Hsc_gene_2651.t1
|
Hsc_gene_2651.t1
|
— | — |
KAI1727241.1 EF-hand domain pair domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
— |
IPR002048+91-116_93-113_118-153_122-150_127-147_161-189_166-220_192-227_196-224+|IPR011992+94-227+|IPR018247+131-143_205-217+
|
SM00054+91-116_122-150_161-189_196-224+
|
PF13202+93-113_127-147+EF_hand|PF13499+166-220+EF-hand_domain_pair
|
— |
PTHR10827+98-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-131;233-294
|
1.000
|
132-232
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
33194.010
|
4.516
|
-11.000
|
25.170
|
8.844
|
52.721
|
47.279
|
10.884
|
14.286
|
52.041
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
356.206
|
164.488
|
236.674
|
105.518
|
329.755
|
640.049
|
63.248
|
445.268
|
0.000
|
814.025
|
465.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.299
|
-0.778
|
-1.059
|
1.611
|
0.972
|
-3.328
|
-0.639
|
-2.666
|
-7.735
|
7.578
|
— | — | — |