Hg_chrom1_TN10mRNA_1257
Organism: Heterodera glycines Gene Locus: chr1:13606459-13608379 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.131 | 0.995 | 0.566 | 0.939 | 1.038 | 0.599 | 1.112 | 0.584 | 1.297 | 1.367 | 0.766 | 1.602 | 0.757 | 0.599 | 1.032 | 1.056 | 1.212 | 1.474 | 0.0 | 0.572 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1200
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.332
|
0.603
|
0.063
|
0.601
|
0.094
|
0.192
|
0.113
|
0.136
|
0.125
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005998
|
1.000
|
1.000
|
Hsc_gene_2649.t1
|
Hsc_gene_2649.t1
|
— |
Q9X248.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG [Thermotoga maritima MSB8]
|
KAI1722191.1 enoyl-(Acyl carrier protein) reductase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.808|GO:0003674_0.766|GO:0008152_0.632|GO:0003824_0.625|GO:0009987_0.596|GO:0005575_0.590|GO:0110165_0.577|GO:0016491_0.571|GO:0044238_0.525|GO:0016614_0.506|GO:0016616_0.506
|
IPR002347+6-23_84-95_130-146_136-144_156-175_177-194_216-236+|IPR036291+6-253+
|
SM00822+5-187+
|
PF13561+11-250+Enoyl-(Acyl_carrier_protein)_reductase
|
G3DSA:3.40.50.720:FF:000084+2-255+Short-chain_dehydrogenase_reductase
|
PTHR43975+4-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
27239.540
|
7.885
|
3.500
|
20.623
|
5.837
|
42.023
|
57.977
|
11.284
|
9.339
|
56.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1361.419
|
494.794
|
1014.211
|
1646.507
|
2390.865
|
1980.921
|
1642.792
|
1051.638
|
551.227
|
1709.640
|
1213.178
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
1.597
|
0.808
|
0.506
|
-0.256
|
-0.259
|
-1.019
|
0.787
|
— |
1.724
|
— | — | — |
No JSON data available for plots.