Hg_chrom1_TN10mRNA_1258
Organism: Heterodera glycines Gene Locus: chr1:13608872-13611867 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.396 | 1.075 | 0.929 | 0.419 | 0.811 | 1.747 | 0.753 | 0.973 | 1.19 | 1.71 | 0.664 | 2.004 | 2.163 | 0.608 | 0.993 | 0.626 | 0.678 | 1.18 | 2.433 | 1.36 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1201
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.557
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.033
|
0.130
|
0.005
|
0.112
|
0.385
|
0.455
|
0.308
|
0.007
|
0.599
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005999
|
1.000
|
1.000
|
Hsc_gene_2648.t1
|
Hsc_gene_2648.t1
|
— |
O01393.1 Innexin unc-9 [Caenorhabditis elegans]
|
KAI3422314.1 Innexin inx3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.866|GO:0110165_0.866|GO:0008150_0.846|GO:0009987_0.720|GO:0030054_0.584|GO:0003674_0.563|GO:0051179_0.562|GO:0006810_0.559|GO:0051234_0.559|GO:0016020_0.542|GO:0005886_0.535|GO:0071944_0.535|GO:0005911_0.515|GO:0070161_0.515|GO:0065007_0.502
|
IPR000990+6-384_12-371_17-364_40-51_68-77_97-119_189-203_237-246_261-277+
|
— |
PF00876+17-364+Innexin
|
— |
PTHR11893+6-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
410-411
|
1.000
|
1-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
48457.190
|
6.691
|
1.000
|
21.168
|
17.518
|
41.119
|
58.881
|
11.192
|
9.976
|
40.146
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
1181.957
|
722.935
|
3155.992
|
1808.217
|
1298.651
|
1279.208
|
1030.917
|
1917.907
|
77.664
|
907.630
|
551.930
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.897
|
1.185
|
-0.695
|
-0.510
|
— |
-0.302
|
0.480
|
-0.754
|
-3.692
|
4.733
|
— | — | — |
No JSON data available for plots.